Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14 123 6e-23 seq25 111 4e-19 seq30 86.0 1e-11 >seq14 Length=35217250 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| | Sbjct 7097610 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 7097669 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | ||||| || || ||||||||| Sbjct 7097670 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTC 7097729 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||| ||||| ||| | ||| | | || | | ||| || || | | Sbjct 7097730 CTTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGC 7097789 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| ||||| || ||||||| ||||| || Sbjct 7097790 GATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTG 7097825 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 7097707 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 7097648 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 201027 | || || ||||| |||||||| ||||| ||||||||| Sbjct 7097647 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTT 7097610 >seq25 Length=29395486 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||| ||||| || || ||||| |||| ||||||||||| | ||| |||||| Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTC----TGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| || | ||| || | | ||| || |||| ||||| ||| Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| || ||||| |||||| Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 9574274 >seq30 Length=26277727 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| || || || |||| |||||| |||| || || | |||||| Sbjct 20335816 CAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATC 20335875 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||| || || |||||||| | | ||||||||| || Sbjct 20335876 TTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGG 20335917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178874971071829