Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq14 123 6e-23
seq25 111 4e-19
seq30 86.0 1e-11
>seq14
Length=35217250
Score = 123 bits (136), Expect = 6e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||| |
Sbjct 7097610 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 7097669
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||| ||||| || || ||||| || | ||||| || || |||||||||
Sbjct 7097670 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTC 7097729
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
| ||| ||||| ||| | ||| | | || | | ||| || || | |
Sbjct 7097730 CTTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGC 7097789
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| ||||| || ||||||| ||||| ||
Sbjct 7097790 GATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTG 7097825
Score = 91.5 bits (100), Expect = 3e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| ||| ||||| || || ||||| ||||||||||| | |||||| | || ||||||
Sbjct 7097707 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACA 7097648
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 201027
| || || ||||| |||||||| ||||| |||||||||
Sbjct 7097647 TTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTT 7097610
>seq25
Length=29395486
Score = 111 bits (122), Expect = 4e-19
Identities = 156/218 (72%), Gaps = 7/218 (3%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||| ||||| || || ||||| |||| ||||||||||| | ||| ||||||
Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTC----TGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || |||||||| | ||||||||| ||| || |||||| |||
Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || ||| || | ||| || | | ||| || |||| ||||| |||
Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || || || ||||| || ||||| ||||||
Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 9574274
>seq30
Length=26277727
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| | ||| ||||| || || || |||| |||||| |||| || || | ||||||
Sbjct 20335816 CAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATC 20335875
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
||||||||| || || |||||||| | | ||||||||| ||
Sbjct 20335876 TTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGG 20335917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178874971071829
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |