Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq30 100 3e-16 seq44 95.1 1e-14 seq60 82.4 8e-11 >seq30 Length=26277727 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||| || | || | ||| || ||| Sbjct 20335944 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGGAAA 20335885 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| || ||||||||||| || ||| | || ||||| Sbjct 20335884 CAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACTCTGCAC 20335825 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| || || Sbjct 20335824 TTGGTCCTGCGCTTGAGGGGGGG 20335802 >seq44 Length=19882732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || || || || || || | |||||| ||||||||| || | |||||| || Sbjct 2427478 ATACAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCGGT 2427419 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| ||| | ||||| || || | ||||| Sbjct 2427418 GACATTATTGAGAATGTCAAAGCTAAAATCCAAGACGAGGAGGGCATCCCACCTGACCAG 2427359 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || | || ||||||||||||||||| |||| |||| ||| |||| ||| Sbjct 2427358 CAGTGTCTGACTTTTGCGGGCAAACAGCTGGAGGACGGCGGCACTCTCTCAGACTGCAAT 2427299 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || | || ||||| |||||| || Sbjct 2427298 ATCCAGAAAGAGTCCACCCTGCACACGGTGCTTCG 2427264 >seq60 Length=14545593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| | |||||||| || ||||| ||||| || ||||| ||| || || Sbjct 8425971 ACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAGATATCATGG 8425912 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||| || ||||| |||||||| |||||||||||||| | || ||| || || Sbjct 8425911 TATTCGATAGGAAAGATCACAAAGCGGCGGGGGTTTTCTCTCAGCAGTGGTTC 8425859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153499582080