Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq30 100 3e-16
seq44 95.1 1e-14
seq60 82.4 8e-11
>seq30
Length=26277727
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| | ||||| ||| || | || | ||| || |||
Sbjct 20335944 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGGAAA 20335885
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | |||||||| || ||||||||||| || ||| | || |||||
Sbjct 20335884 CAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACTCTGCAC 20335825
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||||| || ||
Sbjct 20335824 TTGGTCCTGCGCTTGAGGGGGGG 20335802
>seq44
Length=19882732
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|| || || || || || || || | |||||| ||||||||| || | |||||| ||
Sbjct 2427478 ATACAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCGGT 2427419
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||||||| ||| | ||||| || || | |||||
Sbjct 2427418 GACATTATTGAGAATGTCAAAGCTAAAATCCAAGACGAGGAGGGCATCCCACCTGACCAG 2427359
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | || | || ||||||||||||||||| |||| |||| ||| |||| |||
Sbjct 2427358 CAGTGTCTGACTTTTGCGGGCAAACAGCTGGAGGACGGCGGCACTCTCTCAGACTGCAAT 2427299
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || || | || ||||| |||||| ||
Sbjct 2427298 ATCCAGAAAGAGTCCACCCTGCACACGGTGCTTCG 2427264
>seq60
Length=14545593
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455
|||||||| | |||||||| || ||||| ||||| || ||||| ||| || ||
Sbjct 8425971 ACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAGATATCATGG 8425912
Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
|||| || ||||| |||||||| |||||||||||||| | || ||| || ||
Sbjct 8425911 TATTCGATAGGAAAGATCACAAAGCGGCGGGGGTTTTCTCTCAGCAGTGGTTC 8425859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500153499582080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |