Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq13 168 3e-36
seq14 105 3e-17
seq11 96.9 1e-14
seq22 87.8 7e-12
>seq13
Length=35552856
Score = 168 bits (186), Expect = 3e-36
Identities = 352/524 (67%), Gaps = 3/524 (1%)
Strand=Plus/Plus
Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141
||| || | ||||| || | |||||| |||||| | || ||| | | | | ||||| |
Sbjct 33279172 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCT 33279231
Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201
|| ||| ||| | ||| | | ||| | | ||| | || || ||| ||||||
Sbjct 33279232 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAACGAAGGAGGCAAGCCC 33279291
Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261
| | || |||||||| || | ||| |||| ||||| |||||||| ||
Sbjct 33279292 AAGGTAATGGTGTCCTATAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATTTCTTCC 33279351
Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321
||||| || ||||| ||||| || || || || | | | || || || || ||
Sbjct 33279352 ATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAAT 33279411
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || ||||| || |||||||||||||| | ||||| || || || || ||||||
Sbjct 33279412 GCTGTGATCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 33279471
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| ||||| ||| | |||||||| ||||||| |||||||| ||||| |||||| |
Sbjct 33279472 GGTGTGATTGCGGGTCTCAATGTTCTAAGAATTATCAATGAACCGACAGCTGCTGCTATT 33279531
Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501
|| ||||| ||| ||| | || | ||| | | || || | | |||||| |
Sbjct 33279532 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTG 33279588
Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561
|||||||| || |||| || || || | || || |||||| | ||||| || |||
Sbjct 33279589 GGTGGAGGCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTGAAG 33279648
Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || || || || || || || || ||||| |||| ||
Sbjct 33279649 GCCACAGCCGGGGACACCCACCTGGGGGGGGAAGACTTTGACAA 33279692
>seq14
Length=35217250
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| |||| || || || || || || |||| || |||||| | ||
Sbjct 7097828 ATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTCG 7097769
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | || || || || |||||||||||||||||| ||||||
Sbjct 7097768 GATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCAG 7097709
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| ||||||||| | |||||| | || || ||
Sbjct 7097708 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 7097649
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 7097648 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 7097611
>seq11
Length=39176111
Score = 96.9 bits (106), Expect = 1e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 28112393 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 28112334
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||| ||||| || |||||| | | || || ||||| ||
Sbjct 28112333 AAAGATGCTGGAACTATCGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 28112281
Score = 86.0 bits (94), Expect = 2e-11
Identities = 80/101 (79%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252
|| || || |||||||| || | ||||| |||| ||||| |||||||||||||||
Sbjct 28112850 AAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACAAAAACATTTGCTCCTGAAGAA 28112791
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293
||||| | |||||||| ||||||||||| ||||| || ||
Sbjct 28112790 ATTTCTGCCATGGTTCTCACTAAAATGAAGGAAACTGCTGA 28112750
>seq22
Length=30314786
Score = 87.8 bits (96), Expect = 7e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973
||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| | |||||
Sbjct 1354540 GCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAA 1354599
Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014
|| ||||| ||||| ||||| |||||| ||||| || ||
Sbjct 1354600 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCC 1354640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975640256015396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |