Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq13 168 3e-36 seq14 105 3e-17 seq11 96.9 1e-14 seq22 87.8 7e-12 >seq13 Length=35552856 Score = 168 bits (186), Expect = 3e-36 Identities = 352/524 (67%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | || ||| | | | | ||||| | Sbjct 33279172 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCT 33279231 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | | ||| | || || ||| |||||| Sbjct 33279232 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAACGAAGGAGGCAAGCCC 33279291 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || |||||||| || | ||| |||| ||||| |||||||| || Sbjct 33279292 AAGGTAATGGTGTCCTATAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATTTCTTCC 33279351 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||| ||||| || || || || | | | || || || || || Sbjct 33279352 ATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAAT 33279411 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || |||||||||||||| | ||||| || || || || |||||| Sbjct 33279412 GCTGTGATCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 33279471 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | |||||||| ||||||| |||||||| ||||| |||||| | Sbjct 33279472 GGTGTGATTGCGGGTCTCAATGTTCTAAGAATTATCAATGAACCGACAGCTGCTGCTATT 33279531 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | | || || | | |||||| | Sbjct 33279532 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTG 33279588 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || || || | || || |||||| | ||||| || ||| Sbjct 33279589 GGTGGAGGCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTGAAG 33279648 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || || || || ||||| |||| || Sbjct 33279649 GCCACAGCCGGGGACACCCACCTGGGGGGGGAAGACTTTGACAA 33279692 >seq14 Length=35217250 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| |||| || || || || || || |||| || |||||| | || Sbjct 7097828 ATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTCG 7097769 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | || || || || |||||||||||||||||| |||||| Sbjct 7097768 GATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCAG 7097709 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 7097708 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 7097649 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 7097648 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 7097611 >seq11 Length=39176111 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 28112393 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 28112334 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||| ||||| || |||||| | | || || ||||| || Sbjct 28112333 AAAGATGCTGGAACTATCGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 28112281 Score = 86.0 bits (94), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 || || || |||||||| || | ||||| |||| ||||| ||||||||||||||| Sbjct 28112850 AAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACAAAAACATTTGCTCCTGAAGAA 28112791 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||| | |||||||| ||||||||||| ||||| || || Sbjct 28112790 ATTTCTGCCATGGTTCTCACTAAAATGAAGGAAACTGCTGA 28112750 >seq22 Length=30314786 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| | ||||| Sbjct 1354540 GCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAA 1354599 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || ||||| ||||| ||||| |||||| ||||| || || Sbjct 1354600 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCC 1354640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975640256015396