Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13 179 3e-39 seq22 120 2e-21 seq50 100 2e-15 seq27 95.1 9e-14 seq11 91.5 1e-12 >seq13 Length=35552856 Score = 179 bits (198), Expect = 3e-39 Identities = 451/679 (66%), Gaps = 6/679 (1%) Strand=Plus/Minus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| || || ||| | | ||||| | || ||||| ||||| || ||| Sbjct 33279731 TTCCTCTTGAACTCCTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAGTCTTCCCCCCCC 33279672 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | |||| ||||| || | | || | Sbjct 33279671 AGGTGGGTGTCCCCGGCTGTGGCCTTCACCTCAAAAATCCCATCATCTATGGTCAGGACG 33279612 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT--TGTCTT 518162 | |||||| || || ||||||| |||||| || || |||| | ||| || | | Sbjct 33279611 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACATGTCTCTCTCCCTGACCT 33279552 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||| | | ||| ||||| |||| ||||||||| || |||||||| |||||||| | || Sbjct 33279551 GCTTTATCT-AAG-CCATAGGCAATAGCAGCAGCTGTCGGTTCATTGATAATTCTTAGAA 33279494 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| ||||| ||||| |||||||| || ||||| || | ||| || || || |||| Sbjct 33279493 CATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAAT 33279434 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 | || || ||||| || || |||| || || | || | | |||| || || | Sbjct 33279433 AAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAAAAAAGCCTCAGCAGTCT 33279374 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCA 518401 ||||| ||| | | | ||| || ||||||| || ||| | | |||| | || Sbjct 33279373 CCTTCATCTTAGTCAGTACCATGGAAGAAATTTCCTCAGGGTAGAAA-GCTTTTTTCTCC 33279315 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461 || ||| || || | | || || || | || || |||| ||| ||||| Sbjct 33279314 CCTTTATAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGAAAAGGCCAA 33279255 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 ||||||||||||||| || | |||||||| | || || || | ||||| ||| Sbjct 33279254 AGTTTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCGATCAGACGTTTGGCA 33279195 Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581 ||||| | ||| || ||||| || || | || | ||||| ||||| |||||||| Sbjct 33279194 TCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCCCCAATCAGC 33279135 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | || || ||||| || | || || || || |||||||| || || || || || Sbjct 33279134 CGCTCAGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGATTGCCCTGGTCGTTGGCG 33279075 Query 518642 ATAATTTCAACTTTACCAT 518660 || || || || || |||| Sbjct 33279074 ATGATCTCCACCTTGCCAT 33279056 >seq22 Length=30314786 Score = 120 bits (132), Expect = 2e-21 Identities = 361/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 1356367 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 1356308 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| ||||| | ||| | ||| || ||||| | || || || || | ||||| Sbjct 1356307 AAATCCTGTAGAAGCT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 1356249 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| || || || || || | |||| | | |||| || || || || || Sbjct 1356248 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCCCGAAGAGCTTTCTCTACAGGGTCCAG 1356189 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | || | ||| | | | |||||| ||| || | |||| || | || Sbjct 1356188 GGTGCCACGGAATAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 1356129 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 1356128 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 1356069 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATT 517964 | ||| |||||||||||||| || || | || | || | || || | || | | Sbjct 1356068 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGACGGACAGCCCTCTTGTTCTCACT 1356009 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 518022 ||| || | |||| || | |||||| ||| ||| | | ||| | || | || Sbjct 1356008 GATG----TCCTTCTTATGCTTGCGCTTGAACTCTGCAATAAA--ATGGTTGACCATCCG 1355955 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||| ||||| || ||||| | || | ||| | |||| | | || | ||| | Sbjct 1355954 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTAACCTCGAAGAT 1355895 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| || | || | |||||| || ||||| || | ||||| || || Sbjct 1355894 TCCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 1355835 Query 518143 TACATTCATTTC 518154 || || |||| Sbjct 1355834 CACGTTTCTTTC 1355823 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1355722 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGCACA 1355663 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 1355662 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 1355603 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | ||| |||| Sbjct 1355602 GCAGGTACTGTGACAACAGCAT 1355581 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || |||||| |||| | || || || || || |||| Sbjct 1354729 CAAAAACTGTGTTGGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCGTCACCGATCAATC 1354670 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| || || ||||| | ||||| ||| || || || || ||||||||||| || | Sbjct 1354669 GTTCGGTGTCAGTAAAGGCGACATAGCTTGGGGTGGTTCGGTTTCCTTGATCATTGGCTA 1354610 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| ||||| || | || | ||||| |||||| | || || || | ||||| Sbjct 1354609 TTATTTCCACTTTTCCGTGCTGGAAAACACCCACACAAGAGTAGGTGGTGCCAAGATCAA 1354550 Query 518703 TACCAA 518708 | |||| Sbjct 1354549 TGCCAA 1354544 >seq50 Length=18376352 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| |||||||| ||||||||||| || ||| | || || ||| | Sbjct 2235740 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2235799 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 2235800 GTGGTTGGGAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2235859 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 2235860 GAAGCTTCTCATAAA 2235874 >seq27 Length=27778364 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 20578383 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 20578442 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 20578443 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 20578502 Query 367118 GA 367119 || Sbjct 20578503 GA 20578504 >seq11 Length=39176111 Score = 91.5 bits (100), Expect = 1e-12 Identities = 209/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||| ||||||||| ||| ||||| || ||| ||| ||| || ||| | || |||| Sbjct 28110193 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCTTTGAGCTTTTTGTCTTCCTCAGCAAA 28110250 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 28110251 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 28110304 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 28110305 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCTTTGTCTTCAGCTGTCAC 28110361 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 28110362 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 28110421 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || ||| ||||||| | ||| ||||| || | Sbjct 28110422 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAAGAGGTGATTGTCTTTCGTCAGGGG 28110481 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 28110482 TCGTTCACC 28110490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780669212891422