Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq13 179 3e-39
seq22 120 2e-21
seq50 100 2e-15
seq27 95.1 9e-14
seq11 91.5 1e-12
>seq13
Length=35552856
Score = 179 bits (198), Expect = 3e-39
Identities = 451/679 (66%), Gaps = 6/679 (1%)
Strand=Plus/Minus
Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044
|| |||||||| || || ||| | | ||||| | || ||||| ||||| || |||
Sbjct 33279731 TTCCTCTTGAACTCCTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAGTCTTCCCCCCCC 33279672
Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104
| | || | || | || || | || | |||| ||||| || | | || |
Sbjct 33279671 AGGTGGGTGTCCCCGGCTGTGGCCTTCACCTCAAAAATCCCATCATCTATGGTCAGGACG 33279612
Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT--TGTCTT 518162
| |||||| || || ||||||| |||||| || || |||| | ||| || | |
Sbjct 33279611 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACATGTCTCTCTCCCTGACCT 33279552
Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222
| ||| | | ||| ||||| |||| ||||||||| || |||||||| |||||||| | ||
Sbjct 33279551 GCTTTATCT-AAG-CCATAGGCAATAGCAGCAGCTGTCGGTTCATTGATAATTCTTAGAA 33279494
Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282
|||| ||||| ||||| |||||||| || ||||| || | ||| || || || ||||
Sbjct 33279493 CATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAAT 33279434
Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342
| || || ||||| || || |||| || || | || | | |||| || || |
Sbjct 33279433 AAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAAAAAAGCCTCAGCAGTCT 33279374
Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCA 518401
||||| ||| | | | ||| || ||||||| || ||| | | |||| | ||
Sbjct 33279373 CCTTCATCTTAGTCAGTACCATGGAAGAAATTTCCTCAGGGTAGAAA-GCTTTTTTCTCC 33279315
Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461
|| ||| || || | | || || || | || || |||| ||| |||||
Sbjct 33279314 CCTTTATAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGAAAAGGCCAA 33279255
Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521
||||||||||||||| || | |||||||| | || || || | ||||| |||
Sbjct 33279254 AGTTTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCGATCAGACGTTTGGCA 33279195
Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581
||||| | ||| || ||||| || || | || | ||||| ||||| ||||||||
Sbjct 33279194 TCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCCCCAATCAGC 33279135
Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641
| || || ||||| || | || || || || |||||||| || || || || ||
Sbjct 33279134 CGCTCAGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGATTGCCCTGGTCGTTGGCG 33279075
Query 518642 ATAATTTCAACTTTACCAT 518660
|| || || || || ||||
Sbjct 33279074 ATGATCTCCACCTTGCCAT 33279056
>seq22
Length=30314786
Score = 120 bits (132), Expect = 2e-21
Identities = 361/552 (65%), Gaps = 14/552 (3%)
Strand=Plus/Minus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|||||||| |||||||| |||||||| || | | | ||| |||| ||| || ||||||
Sbjct 1356367 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 1356308
Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|||| ||||| | ||| | ||| || ||||| | || || || || | |||||
Sbjct 1356307 AAATCCTGTAGAAGCT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 1356249
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788
||||| | ||| || || || || || | |||| | | |||| || || || || ||
Sbjct 1356248 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCCCGAAGAGCTTTCTCTACAGGGTCCAG 1356189
Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848
| | || | ||| | | | |||||| ||| || | |||| || | ||
Sbjct 1356188 GGTGCCACGGAATAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 1356129
Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908
| || |||||||| | | ||||||| ||||| | | || || ||||| ||
Sbjct 1356128 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 1356069
Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATT 517964
| ||| |||||||||||||| || || | || | || | || || | || | |
Sbjct 1356068 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGACGGACAGCCCTCTTGTTCTCACT 1356009
Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 518022
||| || | |||| || | |||||| ||| ||| | | ||| | || | ||
Sbjct 1356008 GATG----TCCTTCTTATGCTTGCGCTTGAACTCTGCAATAAA--ATGGTTGACCATCCG 1355955
Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082
|||||||| ||||| || ||||| | || | ||| | |||| | | || | ||| |
Sbjct 1355954 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTAACCTCGAAGAT 1355895
Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142
||||||||||| || | || | |||||| || ||||| || | ||||| || ||
Sbjct 1355894 TCCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 1355835
Query 518143 TACATTCATTTC 518154
|| || ||||
Sbjct 1355834 CACGTTTCTTTC 1355823
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 1355722 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGCACA 1355663
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || || || | || || || ||||| ||
Sbjct 1355662 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 1355603
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || || | ||| ||||
Sbjct 1355602 GCAGGTACTGTGACAACAGCAT 1355581
Score = 93.3 bits (102), Expect = 3e-13
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||||| || ||||| || || |||||| |||| | || || || || || ||||
Sbjct 1354729 CAAAAACTGTGTTGGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCGTCACCGATCAATC 1354670
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
|||| || || ||||| | ||||| ||| || || || || ||||||||||| || |
Sbjct 1354669 GTTCGGTGTCAGTAAAGGCGACATAGCTTGGGGTGGTTCGGTTTCCTTGATCATTGGCTA 1354610
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| ||||| ||||| || | || | ||||| |||||| | || || || | |||||
Sbjct 1354609 TTATTTCCACTTTTCCGTGCTGGAAAACACCCACACAAGAGTAGGTGGTGCCAAGATCAA 1354550
Query 518703 TACCAA 518708
| ||||
Sbjct 1354549 TGCCAA 1354544
>seq50
Length=18376352
Score = 100 bits (110), Expect = 2e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || |||| |||||||| ||||||||||| || ||| | || || ||| |
Sbjct 2235740 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2235799
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| |
Sbjct 2235800 GTGGTTGGGAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2235859
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 2235860 GAAGCTTCTCATAAA 2235874
>seq27
Length=27778364
Score = 95.1 bits (104), Expect = 9e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057
|||| || ||||| ||||| ||||| ||||||||| | || || | || |||||||
Sbjct 20578383 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 20578442
Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117
|||| ||||| ||| | || ||| ||||| || || ||||||||||| || |||||||
Sbjct 20578443 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 20578502
Query 367118 GA 367119
||
Sbjct 20578503 GA 20578504
>seq11
Length=39176111
Score = 91.5 bits (100), Expect = 1e-12
Identities = 209/309 (68%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155
|||| ||||||||| ||| ||||| || ||| ||| ||| || ||| | || ||||
Sbjct 28110193 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCTTTGAGCTTTTTGTCTTCCTCAGCAAA 28110250
Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212
| | ||| || ||| ||| || ||||||| |||||| | | ||||||
Sbjct 28110251 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 28110304
Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266
||| ||||| || || || || |||||| ||| ||| || | || |||||
Sbjct 28110305 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCTTTGTCTTCAGCTGTCAC 28110361
Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326
|||||| ||||| |||| | ||||| ||||||||||| || |||||||| | |
Sbjct 28110362 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 28110421
Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386
|||||| || || || || || ||| ||||||| | ||| ||||| || |
Sbjct 28110422 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAAGAGGTGATTGTCTTTCGTCAGGGG 28110481
Query 517387 TCGTTCACC 517395
|||||||||
Sbjct 28110482 TCGTTCACC 28110490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780669212891422
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