Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq25 114 3e-20
seq14 114 3e-20
>seq25
Length=29395486
Score = 114 bits (126), Expect = 3e-20
Identities = 153/211 (73%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994
||||| || || |||||| | | ||||| || | |||||| |||||||| |||
Sbjct 9574070 AGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGC 9574125
Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054
||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || ||
Sbjct 9574126 TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATC 9574185
Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111
|| || || ||||| ||||| || ||| |||||| || ||||| | |||||
Sbjct 9574186 TTGGCCTCCACATTCTCCATGGTATC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTG 9574242
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| |||| || || ||||| | ||||||||
Sbjct 9574243 CCGGTCAGGGTCTTCACGAAGATTTGCATTT 9574273
>seq14
Length=35217250
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| |
Sbjct 7097611 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7097670
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || ||||| |||| ||| || || ||||||| |||||
Sbjct 7097671 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCC 7097730
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| | || || || ||| | | || || | ||||| ||| || || || |
Sbjct 7097731 TTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCG 7097790
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| || | |||| ||||| | |||||
Sbjct 7097791 ATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109437717575729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |