Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq25 114 3e-20 seq14 114 3e-20 >seq25 Length=29395486 Score = 114 bits (126), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || || |||||| | | ||||| || | |||||| |||||||| ||| Sbjct 9574070 AGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGC 9574125 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || || Sbjct 9574126 TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATC 9574185 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||| ||||| || ||| |||||| || ||||| | ||||| Sbjct 9574186 TTGGCCTCCACATTCTCCATGGTATC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTG 9574242 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| || || ||||| | |||||||| Sbjct 9574243 CCGGTCAGGGTCTTCACGAAGATTTGCATTT 9574273 >seq14 Length=35217250 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 7097611 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7097670 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| || || ||||||| ||||| Sbjct 7097671 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCC 7097730 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| | | || || | ||||| ||| || || || | Sbjct 7097731 TTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCG 7097790 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | |||| ||||| | ||||| Sbjct 7097791 ATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109437717575729