Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq30 84.2 1e-11 seq44 82.4 5e-11 >seq30 Length=26277727 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | || ||||||||| ||||| || || || Sbjct 20335802 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGAC 20335861 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || || || || | | |||||||| | || Sbjct 20335862 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 20335921 Query 34875 ACCCCCTCCTTGTC 34888 | ||||||||||| Sbjct 20335922 ATGCCCTCCTTGTC 20335935 >seq44 Length=19882732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || |||| || || | | | || ||||||||||| || ||||| Sbjct 2427288 TCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCCTCCAGCTGTTTGCCCGCAAAA 2427347 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 | || | |||||||| | || | ||||||| ||| || || |||||| || Sbjct 2427348 GTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCTTGGATTTTAGCTTTGAC--AT 2427405 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || ||||||| ||| || | || ||| ||||| || ||| | || ||||||| Sbjct 2427406 TCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGGTCTTGCCCATCAGGGTCTTCA 2427465 Query 34969 CAAAGATCTGCAT 34981 |||||||||| || Sbjct 2427466 CAAAGATCTGTAT 2427478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621386370936