Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq35 120 3e-22 seq60 114 1e-20 seq48 111 2e-19 >seq35 Length=24201928 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||||||||| || | |||||||| || |||||||| ||| Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 13540862 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 13540863 ACCACCCTTTCCCC 13540876 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 13547385 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 | || ||||||| || |||||||| || | | ||||| | | | ||| || | Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501 Query 19454 ATAAATCTAC 19463 |||| || || Sbjct 13547502 ATAAGTCAAC 13547511 >seq60 Length=14545593 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| ||||| ||||| || | || ||||||||||||| ||| | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || ||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TCAT--TAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| || | || ||| |||||||| Sbjct 8430737 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGA---CATCACTCCCAT 8430681 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 8430680 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 8430621 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 8430620 CTCCATAAAGTCAAATGGATTTTCTAC 8430594 >seq48 Length=18573065 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||| ||||| || || Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| ||||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 2886354 TTTCTTACACCATA 2886367 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| ||||| | ||| ||| |||| || | |||||| || | Sbjct 2883768 TCCAGCCATAGAAGTGCATGCTAGTCAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2883827 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||||||||| || ||||| || |||||||| | | ||| Sbjct 2883828 TCAAAGACTGGCTTTGATCAATAAAAGCGCCTCTCTCGGCTGCCATCTTGAGAATGGTTT 2883887 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 2883888 TCTGAGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 2883936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087109626680