Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 3e-22
seq60 114 1e-20
seq48 111 2e-19
>seq35
Length=24201928
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||||||||| || | |||||||| || |||||||| |||
Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 13540862
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 13540863 ACCACCCTTTCCCC 13540876
Score = 89.7 bits (98), Expect = 6e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 13547385 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453
| || ||||||| || |||||||| || | | ||||| | | | ||| || |
Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501
Query 19454 ATAAATCTAC 19463
|||| || ||
Sbjct 13547502 ATAAGTCAAC 13547511
>seq60
Length=14545593
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || |||| ||||| ||||| || | || ||||||||||||| ||| |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 19103 CAACTAGTCTTTCTCC 19118
| || | || |||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
Score = 100 bits (110), Expect = 3e-16
Identities = 112/147 (76%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TCAT--TAGAATTCATTACTCCCAT 18668
||| || ||| ||||||| | ||||||||||||| || | || ||| ||||||||
Sbjct 8430737 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGA---CATCACTCCCAT 8430681
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 8430680 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 8430621
Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 8430620 CTCCATAAAGTCAAATGGATTTTCTAC 8430594
>seq48
Length=18573065
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || || || ||||| ||||| || ||
Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| ||||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 2886354 TTTCTTACACCATA 2886367
Score = 93.3 bits (102), Expect = 5e-14
Identities = 122/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| ||||| ||||| | ||| ||| |||| || | |||||| || |
Sbjct 2883768 TCCAGCCATAGAAGTGCATGCTAGTCAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2883827
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || ||||||||||| || ||||| || |||||||| | | |||
Sbjct 2883828 TCAAAGACTGGCTTTGATCAATAAAAGCGCCTCTCTCGGCTGCCATCTTGAGAATGGTTT 2883887
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 2883888 TCTGAGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 2883936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562087109626680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |