Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13 140 3e-27 seq22 125 6e-23 seq14 105 5e-17 seq115 93.3 3e-13 seq11 91.5 1e-12 >seq13 Length=35552856 Score = 140 bits (154), Expect = 3e-27 Identities = 338/502 (67%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| || || || || || ||||| || || || || | || || || || || Sbjct 33279056 ATGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGG 33279115 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTA 550160 | ||||| || ||||| | | |||| ||||| || || | || ||||| || | Sbjct 33279116 CCTTCACAGACACTGAGCGGCTGATTGGGGATGCGGCCAAGAACCAGGTAGCCA-TG--A 33279172 Query 550161 ATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220 |||| || ||| | |||||||| |||||| | || || || | ||||||||| | Sbjct 33279173 ATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCTG 33279232 Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTT 550280 || || |||||||||| | ||||||||| ||| | | || | || || || Sbjct 33279233 TAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAACGAAGGAGGCAAGCCCA 33279292 Query 550281 A--TATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-TTTCA--CCAGAACAAATTTC 550335 | || || | | || || |||| | ||| || |||| || || ||||||| Sbjct 33279293 AGGTAATGGTG-TCCT-ATAAAGGG---GAGAAAAAAGCTTTCTACCCTGAGGAAATTTC 33279347 Query 550336 ATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTAC 550395 || ||||| | | || ||||| | || || |||||| | || || || || Sbjct 33279348 TTCCATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCAC 33279407 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||| || || ||||| ||||| ||||| |||||||| ||||| || || || || || Sbjct 33279408 CAATGCTGTGATCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGA 33279467 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||||| || || |||||||| | |||||||||||||| || |||||||| Sbjct 33279468 TGCAGGTGTGATTGCGGGTCTCAATGTTCTAAGAATTATCAATGAACCGACAGCTGCTGC 33279527 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 33279528 TATTGCCTATGGCTTAGATAAA 33279549 >seq22 Length=30314786 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || ||||||||||| || ||||| ||||| Sbjct 1355574 GTTACCAATGCTGTTGTCACAGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACC 1355633 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 1355634 AAAGATGCTGGAACTATTGCTGGTCTCAATGTGCTTAGAATCATCAATGAGCCAACTGCT 1355693 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 1355694 GCTGCTATTGCTTATGG 1355710 Score = 107 bits (118), Expect = 2e-17 Identities = 230/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | ||||| || | |||||||| ||| | || || || ||||||| || | || Sbjct 1356024 GCTGTCCGTCGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTTTCTTCCAGCACC 1356083 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| |||||| | |||||| | | ||| ||||| || | |||| ||||| | Sbjct 1356084 CAGGCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACC 1356143 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| ||||||||| | | |||| || || | || | || || ||||| Sbjct 1356144 CGTGCCCGATTTGAAGAATTGAATGCTGACCTATTCCGTGGCACCCTGGACCCTGTAGAG 1356203 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 ||| | | | ||| | ||| | || || ||| | | ||||| ||||| || || ||| Sbjct 1356204 AAAGCTCTTCGGGATGCCAAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGT 1356263 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAA 552194 || ||||| | || || || |||| | | || || |||||| || ||| || Sbjct 1356264 GGTTCTACCCGTATCCCCAAGATTCAGAAGCTTCTACAGGATTTTTTCAACGGAAAAGAA 1356323 Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | ||| | || | || || |||||||||||||| |||||||| Sbjct 1356324 CTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 1356367 Score = 87.8 bits (96), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || |||||| ||||||| || | || ||||| ||| Sbjct 1354546 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTGGAA 1354605 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || ||| ||||| | || || || || Sbjct 1354606 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCCTTTACTGACACC 1354665 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || | ||||| || ||||| | |||| || || || || ||||| || Sbjct 1354666 GAACGATTGATCGGTGACGCTGCAAAGAACCAAGTTGCAATG--AACCCCACCAACACAG 1354723 Query 550176 TTTTTG 550181 |||||| Sbjct 1354724 TTTTTG 1354729 >seq14 Length=35217250 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 7097620 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 7097677 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||||||| ||||||||||||| |||| | Sbjct 7097678 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATTCT 7097737 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||| | || ||| |||| | | | | ||||||| | || | Sbjct 7097738 GGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCGATGGTCT 7097797 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| |||| |||||||| ||||| Sbjct 7097798 TTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828 >seq115 Length=4025681 Score = 93.3 bits (102), Expect = 3e-13 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| || ||| || ||| ||| |||| | ||| | | | |||| Sbjct 2519646 ACAAGATGAAGAGTGTATTCCTTTTGAAT---GTAGTCAGACAAAGTACATCCAGCTTCC 2519702 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 |||||||| || ||||| || ||||||||||||||||||||||||||||| ||||| || Sbjct 2519703 AGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2519762 Query 563386 AT 563387 || Sbjct 2519763 AT 2519764 >seq11 Length=39176111 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| ||||| ||||| | ||||| || || || Sbjct 28112393 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 28112334 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| ||| |||||| | |||||| | | || |||||||| || Sbjct 28112333 AAAGATGCTGGAACTATCGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 28112281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029132745517630