Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq13 140 3e-27
seq22 125 6e-23
seq14 105 5e-17
seq115 93.3 3e-13
seq11 91.5 1e-12
>seq13
Length=35552856
Score = 140 bits (154), Expect = 3e-27
Identities = 338/502 (67%), Gaps = 16/502 (3%)
Strand=Plus/Plus
Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103
|||| || || || || || ||||| || || || || | || || || || ||
Sbjct 33279056 ATGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGG 33279115
Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTA 550160
| ||||| || ||||| | | |||| ||||| || || | || ||||| || |
Sbjct 33279116 CCTTCACAGACACTGAGCGGCTGATTGGGGATGCGGCCAAGAACCAGGTAGCCA-TG--A 33279172
Query 550161 ATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220
|||| || ||| | |||||||| |||||| | || || || | ||||||||| |
Sbjct 33279173 ATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCTG 33279232
Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTT 550280
|| || |||||||||| | ||||||||| ||| | | || | || || ||
Sbjct 33279233 TAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAACGAAGGAGGCAAGCCCA 33279292
Query 550281 A--TATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-TTTCA--CCAGAACAAATTTC 550335
| || || | | || || |||| | ||| || |||| || || |||||||
Sbjct 33279293 AGGTAATGGTG-TCCT-ATAAAGGG---GAGAAAAAAGCTTTCTACCCTGAGGAAATTTC 33279347
Query 550336 ATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTAC 550395
|| ||||| | | || ||||| | || || |||||| | || || || ||
Sbjct 33279348 TTCCATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCAC 33279407
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||| || || ||||| ||||| ||||| |||||||| ||||| || || || || ||
Sbjct 33279408 CAATGCTGTGATCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGA 33279467
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| || ||||| || || |||||||| | |||||||||||||| || ||||||||
Sbjct 33279468 TGCAGGTGTGATTGCGGGTCTCAATGTTCTAAGAATTATCAATGAACCGACAGCTGCTGC 33279527
Query 550516 ACTTGCATATGGACTTGATAAA 550537
|||| ||||| | ||||||
Sbjct 33279528 TATTGCCTATGGCTTAGATAAA 33279549
>seq22
Length=30314786
Score = 125 bits (138), Expect = 6e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || ||||| || || ||||||||||| || ||||| |||||
Sbjct 1355574 GTTACCAATGCTGTTGTCACAGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACC 1355633
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || ||||| ||| | || |||||||| || ||||||
Sbjct 1355634 AAAGATGCTGGAACTATTGCTGGTCTCAATGTGCTTAGAATCATCAATGAGCCAACTGCT 1355693
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 1355694 GCTGCTATTGCTTATGG 1355710
Score = 107 bits (118), Expect = 2e-17
Identities = 230/344 (67%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||| | ||||| || | |||||||| ||| | || || || ||||||| || | ||
Sbjct 1356024 GCTGTCCGTCGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTTTCTTCCAGCACC 1356083
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| |||||| | |||||| | | ||| ||||| || | |||| ||||| |
Sbjct 1356084 CAGGCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACC 1356143
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| ||| ||||||||| | | |||| || || | || | || || |||||
Sbjct 1356144 CGTGCCCGATTTGAAGAATTGAATGCTGACCTATTCCGTGGCACCCTGGACCCTGTAGAG 1356203
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
||| | | | ||| | ||| | || || ||| | | ||||| ||||| || || |||
Sbjct 1356204 AAAGCTCTTCGGGATGCCAAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGT 1356263
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAA 552194
|| ||||| | || || || |||| | | || || |||||| || ||| ||
Sbjct 1356264 GGTTCTACCCGTATCCCCAAGATTCAGAAGCTTCTACAGGATTTTTTCAACGGAAAAGAA 1356323
Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238
| ||| | || | || || |||||||||||||| ||||||||
Sbjct 1356324 CTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 1356367
Score = 87.8 bits (96), Expect = 1e-11
Identities = 132/186 (71%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || |||||| ||||||| || | || ||||| |||
Sbjct 1354546 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTGGAA 1354605
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| || |||||||||||||| ||| |||| || ||| ||||| | || || || ||
Sbjct 1354606 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCCTTTACTGACACC 1354665
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175
|||| || | ||||| || ||||| | |||| || || || || ||||| ||
Sbjct 1354666 GAACGATTGATCGGTGACGCTGCAAAGAACCAAGTTGCAATG--AACCCCACCAACACAG 1354723
Query 550176 TTTTTG 550181
||||||
Sbjct 1354724 TTTTTG 1354729
>seq14
Length=35217250
Score = 105 bits (116), Expect = 5e-17
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
||||||||||| || ||| |||| ||| ||||| |||| | ||| | | |||||
Sbjct 7097620 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 7097677
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || ||||| || ||||||||||||||| ||||||||||||| |||| |
Sbjct 7097678 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATTCT 7097737
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||| | || ||| |||| | | | | ||||||| | || |
Sbjct 7097738 GGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCGATGGTCT 7097797
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || ||||| |||| |||||||| |||||
Sbjct 7097798 TTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828
>seq115
Length=4025681
Score = 93.3 bits (102), Expect = 3e-13
Identities = 94/122 (77%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325
||||||||||| || ||| || ||| ||| |||| | ||| | | | ||||
Sbjct 2519646 ACAAGATGAAGAGTGTATTCCTTTTGAAT---GTAGTCAGACAAAGTACATCCAGCTTCC 2519702
Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385
|||||||| || ||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 2519703 AGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2519762
Query 563386 AT 563387
||
Sbjct 2519763 AT 2519764
>seq11
Length=39176111
Score = 91.5 bits (100), Expect = 1e-12
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||| ||||| ||||| | ||||| || || ||
Sbjct 28112393 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 28112334
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| ||| |||||| | |||||| | | || |||||||| ||
Sbjct 28112333 AAAGATGCTGGAACTATCGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 28112281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029132745517630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |