Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq135 154 2e-32 seq15 107 2e-18 seq278 93.3 5e-14 seq108 89.7 6e-13 seq472 86.0 8e-12 seq13 86.0 8e-12 seq296 82.4 1e-10 >seq135 Length=2430860 Score = 154 bits (170), Expect = 2e-32 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || || ||||| ||||||||| |||| ||| || ||||| Sbjct 2146662 ACTGAGGAACTTACAAGTTGCCAGTCACACTCAACTGTCAGGGAATGGGACTTGTGAGAT 2146603 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| |||| ||| |||| ||||||||| ||| ||||| ||| | || Sbjct 2146602 CCACCTGACCTGCACTGTGGAGAATCCGAATGACAACGTCTTATTCAAGTGGCGGATCTC 2146543 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| || | |||||||| |||||||||||||||| ||| ||| Sbjct 2146542 AGGAAACACATCTCTAAATGAAACAAACCTCACTACCTCCTGGGACCCCAAGAATTCCAG 2146483 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||||||||||| ||||| || || || ||| |||||| | || || | ||||| Sbjct 2146482 TGAACAGAACTACACCTGCATAGCTGAGAATCTTGTCAGCAATTTATCGTTTTCTGTCTC 2146423 Query 2447 GGCCCAGA 2454 || |||| Sbjct 2146422 TGCTCAGA 2146415 >seq15 Length=34426505 Score = 107 bits (118), Expect = 2e-18 Identities = 224/328 (68%), Gaps = 17/328 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||| ||||| |||| ||| ||||||| || |||||||| ||||| Sbjct 961095 GTTTCACAAATGAGCTCAACCCCATTGATGGTGGATGGGGTACTGGGGGAGTCAGTAACT 961154 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| | ||| || || ||| ||||| | ||||||||||||| ||| || Sbjct 961155 CTTCCCCTGGAGTGTCCTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAGTGGA 961214 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAA--GAGCCCCCAGATCCACCTAACCA 2055 | || ||| || | || |||||| | || ||| ||| | || Sbjct 961215 TCATCTATCACCGTCAT----------ACGGCCAAATAAACCATCAG-TCCTGGTGACTG 961263 Query 2056 ATCCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAAC 2114 ||| ||| ||| | | ||||| | ||| |||||||||||| | || ||||||||| Sbjct 961264 CTCC-AAAATGGAAAGATCGACTGCATGTCATCCAGTCCTACTCCTTGCAGCTGAGCAAC 961322 Query 2115 CTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC 2174 || ||||| |||| | || || ||||| | || || | | | ||| | | | Sbjct 961323 CTGATGATGGCAGACGCAGGATCATACAGCGTCCGTATAGGCACAAATACCTC-TTCAGT 961381 Query 2175 G-TTTCCAGCTACACGCTGAGGATCTTC 2201 | |||||| ||||| |||||||||||| Sbjct 961382 GTTTTCCAATTACACTCTGAGGATCTTC 961409 Score = 93.3 bits (102), Expect = 5e-14 Identities = 221/328 (67%), Gaps = 17/328 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||||| ||| | ||| || ||||| || |||||||| ||||| Sbjct 905710 GTTTCACAAATGAGCTCCATCCCACCGATGGTTGCCGGGGTTCTGGGGGAGTCAGTAACT 905769 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || ||| ||||| | ||||||||||||| ||||||| Sbjct 905770 CTTCCCCTGAAGTTTCTTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 905829 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || ||| || || || || | || || || || | || | Sbjct 905830 ACATCTATCATCTACATACAGCCAAATGAAG-CATGAACC-----AT---GGTGACTGCT 905880 Query 2058 CCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || ||| ||| | | |||| || |||| ||||||||||| | || | |||||||| Sbjct 905881 CC-AAAATGGAAAGATAGACTGAAGGTCACCAAGTCCTACTCCTTGCAGGTCAGCAACCT 905939 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACC---ACAGTTAA 2173 |||||||||||| || || || |||| || || | ||||| ||||| Sbjct 905940 GACGATGGAAGACACAGGATCTTATAGTGTCCAAATAGTTACAAAGACCTCTACAGT--- 905996 Query 2174 CGTTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||| ||||| ||||||||| || Sbjct 905997 GTTTTCCAGTTACACTCTGAGGATCATC 906024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||| ||||| ||||| |||| ||| | || || |||||||| ||||| Sbjct 935818 GTTTCACAAACGAGCTCAACCCCATTGATGGTGGCCAGTGTTCTGGGGGAGTCAGTAACT 935877 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | ||||| || || ||| ||||| | ||||||||||||| ||||||| Sbjct 935878 CTTCCCCTGAAGTTTCCTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 935937 Query 1998 ACCTCCATC 2006 || || ||| Sbjct 935938 ACATCTATC 935946 >seq278 Length=39418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 221/329 (67%), Gaps = 19/329 (6%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||| ||||| ||||| |||| ||| || || || |||||||| ||||| Sbjct 6510 GTTTCACAAACGAGCTCAACCCCATTGATGGTGGCCGGTGTTCTGGGGGAGTCAGTAACT 6451 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | ||||| || || ||| |||| | ||||||||||||| ||| || Sbjct 6450 CTTCCCCTGAAGTTTCCTGCAGGAGAGGAGATTGACTCCATCACCTGGCTTCACAGGGGA 6391 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAA--GAGCCCCCAGATCCACCTAACCA 2055 || || || ||| || | |||| || | | | ||| | || Sbjct 6390 ACATCTGTCATCTTCAT----------AAATCCAAATGAAGCACTA-TTCCTGGTGACTG 6342 Query 2056 ATCCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAA 2113 ||| |||| | ||| |||| || |||| |||||||||||| | || || ||||| Sbjct 6341 CTCCAAAAC--GCAAAGATAGACTGAAGGTCACCCAGTCCTACTCCTTGCAGCTCAGCAA 6284 Query 2114 CCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAA 2173 ||| ||||| |||| | || || ||||||| || ||| | | | ||| | | | Sbjct 6283 CCTGACGATGGCAGACGCAGGATCATACAGTGTCCAGATAGTCACGAATACCTC-TTCAG 6225 Query 2174 CG-TTTCCAGCTACACGCTGAGGATCTTC 2201 | ||| ||| ||||| |||||||||||| Sbjct 6224 TGTTTTTCAGTTACACTCTGAGGATCTTC 6196 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/331 (67%), Gaps = 23/331 (7%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||| ||||| ||| |||| ||||| || |||||||| ||||| Sbjct 22098 GTTTCACAAATGAGCTCAACCCCATCGATGGTGACCGGGGTTCTGGGGGAGTCGGTAACT 22039 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || ||||| | ||||| || | ||| ||||| | ||||||||||||| ||||||| Sbjct 22038 CTTGCCCTGAAGTTTCCTGCAAGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 21979 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || ||| ||| || || || | || || ||| | || | Sbjct 21978 ACATCTATCATCTTCATACAGCCAAATGAAG-CACGA--------ATCATGGTGACAGCT 21928 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 || |||| || ||| |||| || ||| |||| ||||||| | || || | ||||| Sbjct 21927 CCCAAAC--GGAAAGATAGACTGAAGGTCATCCAGTTCTACTCCTTGCAGCTCAACAACC 21870 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGAT-GTCCTCCGAG-ACCACAGTTAA 2173 | |||| ||| | || || ||||||| || ||| ||| |||| ||| | | Sbjct 21869 TGACAATGGCAGATGCAGGATCATACAGTGTCCAGATAGTC--ACGAGTACCTC---TTC 21815 Query 2174 CG---TTTCCAGCTACACGCTGAGGATCTTC 2201 || ||||||| ||||| |||||||||||| Sbjct 21814 CGTGTTTTCCAGTTACACTCTGAGGATCTTC 21784 >seq108 Length=4508817 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATATCATCATCA 177737 ||||||||||| ||||| ||| |||||||||| ||||| || | | || | | ||| Sbjct 4377184 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAATAACCAGAGTCTA-CGGC-TCA 4377241 Query 177738 CAGA--AAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAG 177793 |||| | || |||||| || |||| | | ||||||| |||||||| ||| ||||| Sbjct 4377242 CAGAGCAGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCGTCAGGAGAG 4377301 Query 177794 AGGATTTGGGACGACATCACTGTGAGGTCTCCAACC 177829 ||||| || |||| |||||||||||||||| Sbjct 4377302 AGGATGCCGGGGATTATCAGTGTGAGGTCTCCAACC 4377337 >seq472 Length=8883 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/157 (75%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATAT-CATCATC 177736 ||||||||||| ||||| ||| |||||||||| ||||| || | ||| | ||| | Sbjct 7139 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAATAACCAGAGTATCTGGCTCA-C 7197 Query 177737 ACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAGA 177794 | || || |||||| || |||| | | ||||||| |||||||| ||| ||| || Sbjct 7198 AGAGCGGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCTGTCAGGAGGGA 7257 Query 177795 GGATTTGGGACGA-CATCACTGTGAGGTCTCCAACCT 177830 |||| || ||| |||| ||||||||||||||||| Sbjct 7258 GGATGCTGG-CGATTATCAGTGTGAGGTCTCCAACCT 7293 >seq13 Length=35552856 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| ||| ||||||||||| || || | ||| Sbjct 34076059 CCCTCATGCTGCACATGGCACGTGTATCTCCGCTCCTCTCCAGAAGGCACCACCACAGCC 34076118 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 ||||| || || || ||||| ||||| || || | || || | ||| || || || Sbjct 34076119 ACCCACTTCTGGAAGGTCCCGTCTCCTGCAGGCCTGGTCTCCACAAACTCGGTGTCCTGG 34076178 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || || ||||| || | ||| || | | || || || || || || |||||| Sbjct 34076179 GTCAGGTCCTCCCCGTCCCGCTGCCAGGTCAGAGTGATCTCCGCAGGGTAGAAGCCCAAA 34076238 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 34076239 GCCCAGCACC 34076248 >seq296 Length=20786 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATAT-CATCATC 177736 ||||||||||| ||||| ||| |||||||||| | ||| || | | | | ||| | Sbjct 14436 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAGTAACCAGAGTCTCTGGCTCA-C 14378 Query 177737 ACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAGA 177794 | || | || |||||| || |||| | | ||||||| |||||||| ||| |||||| Sbjct 14377 AGAGCAGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCGTCAGGAGAGA 14318 Query 177795 GGATTTGGGACGACATCACTGTGAGGTCTCCAACCT 177830 |||| || |||| ||||||||||||||||| Sbjct 14317 GGATGCCGGGGATTATCAGTGTGAGGTCTCCAACCT 14282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629258917534520