Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq135 154 2e-32
seq15 107 2e-18
seq278 93.3 5e-14
seq108 89.7 6e-13
seq472 86.0 8e-12
seq13 86.0 8e-12
seq296 82.4 1e-10
>seq135
Length=2430860
Score = 154 bits (170), Expect = 2e-32
Identities = 183/248 (74%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266
||||| |||| | || || || ||||| ||||||||| |||| ||| || |||||
Sbjct 2146662 ACTGAGGAACTTACAAGTTGCCAGTCACACTCAACTGTCAGGGAATGGGACTTGTGAGAT 2146603
Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326
||| |||||||| |||| ||| |||| ||||||||| ||| ||||| ||| | ||
Sbjct 2146602 CCACCTGACCTGCACTGTGGAGAATCCGAATGACAACGTCTTATTCAAGTGGCGGATCTC 2146543
Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386
|| || || |||| || | |||||||| |||||||||||||||| ||| |||
Sbjct 2146542 AGGAAACACATCTCTAAATGAAACAAACCTCACTACCTCCTGGGACCCCAAGAATTCCAG 2146483
Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446
||| ||||||||||| ||||| || || || ||| |||||| | || || | |||||
Sbjct 2146482 TGAACAGAACTACACCTGCATAGCTGAGAATCTTGTCAGCAATTTATCGTTTTCTGTCTC 2146423
Query 2447 GGCCCAGA 2454
|| ||||
Sbjct 2146422 TGCTCAGA 2146415
>seq15
Length=34426505
Score = 107 bits (118), Expect = 2e-18
Identities = 224/328 (68%), Gaps = 17/328 (5%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| ||||| ||||| |||| ||| ||||||| || |||||||| |||||
Sbjct 961095 GTTTCACAAATGAGCTCAACCCCATTGATGGTGGATGGGGTACTGGGGGAGTCAGTAACT 961154
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| | ||| || || ||| ||||| | ||||||||||||| ||| ||
Sbjct 961155 CTTCCCCTGGAGTGTCCTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAGTGGA 961214
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAA--GAGCCCCCAGATCCACCTAACCA 2055
| || ||| || | || |||||| | || ||| ||| | ||
Sbjct 961215 TCATCTATCACCGTCAT----------ACGGCCAAATAAACCATCAG-TCCTGGTGACTG 961263
Query 2056 ATCCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAAC 2114
||| ||| ||| | | ||||| | ||| |||||||||||| | || |||||||||
Sbjct 961264 CTCC-AAAATGGAAAGATCGACTGCATGTCATCCAGTCCTACTCCTTGCAGCTGAGCAAC 961322
Query 2115 CTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC 2174
|| ||||| |||| | || || ||||| | || || | | | ||| | | |
Sbjct 961323 CTGATGATGGCAGACGCAGGATCATACAGCGTCCGTATAGGCACAAATACCTC-TTCAGT 961381
Query 2175 G-TTTCCAGCTACACGCTGAGGATCTTC 2201
| |||||| ||||| ||||||||||||
Sbjct 961382 GTTTTCCAATTACACTCTGAGGATCTTC 961409
Score = 93.3 bits (102), Expect = 5e-14
Identities = 221/328 (67%), Gaps = 17/328 (5%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| ||||||| ||| | ||| || ||||| || |||||||| |||||
Sbjct 905710 GTTTCACAAATGAGCTCCATCCCACCGATGGTTGCCGGGGTTCTGGGGGAGTCAGTAACT 905769
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||| | |||| || || ||| ||||| | ||||||||||||| |||||||
Sbjct 905770 CTTCCCCTGAAGTTTCTTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 905829
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || ||| || || || || | || || || || | || |
Sbjct 905830 ACATCTATCATCTACATACAGCCAAATGAAG-CATGAACC-----AT---GGTGACTGCT 905880
Query 2058 CCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116
|| ||| ||| | | |||| || |||| ||||||||||| | || | ||||||||
Sbjct 905881 CC-AAAATGGAAAGATAGACTGAAGGTCACCAAGTCCTACTCCTTGCAGGTCAGCAACCT 905939
Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACC---ACAGTTAA 2173
|||||||||||| || || || |||| || || | ||||| |||||
Sbjct 905940 GACGATGGAAGACACAGGATCTTATAGTGTCCAAATAGTTACAAAGACCTCTACAGT--- 905996
Query 2174 CGTTTCCAGCTACACGCTGAGGATCTTC 2201
||||||| ||||| ||||||||| ||
Sbjct 905997 GTTTTCCAGTTACACTCTGAGGATCATC 906024
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || ||||| ||||| ||||| |||| ||| | || || |||||||| |||||
Sbjct 935818 GTTTCACAAACGAGCTCAACCCCATTGATGGTGGCCAGTGTTCTGGGGGAGTCAGTAACT 935877
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||| | ||||| || || ||| ||||| | ||||||||||||| |||||||
Sbjct 935878 CTTCCCCTGAAGTTTCCTGCAGGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 935937
Query 1998 ACCTCCATC 2006
|| || |||
Sbjct 935938 ACATCTATC 935946
>seq278
Length=39418
Score = 93.3 bits (102), Expect = 5e-14
Identities = 221/329 (67%), Gaps = 19/329 (6%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || ||||| ||||| ||||| |||| ||| || || || |||||||| |||||
Sbjct 6510 GTTTCACAAACGAGCTCAACCCCATTGATGGTGGCCGGTGTTCTGGGGGAGTCAGTAACT 6451
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||| | ||||| || || ||| |||| | ||||||||||||| ||| ||
Sbjct 6450 CTTCCCCTGAAGTTTCCTGCAGGAGAGGAGATTGACTCCATCACCTGGCTTCACAGGGGA 6391
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAA--GAGCCCCCAGATCCACCTAACCA 2055
|| || || ||| || | |||| || | | | ||| | ||
Sbjct 6390 ACATCTGTCATCTTCAT----------AAATCCAAATGAAGCACTA-TTCCTGGTGACTG 6342
Query 2056 ATCCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAA 2113
||| |||| | ||| |||| || |||| |||||||||||| | || || |||||
Sbjct 6341 CTCCAAAAC--GCAAAGATAGACTGAAGGTCACCCAGTCCTACTCCTTGCAGCTCAGCAA 6284
Query 2114 CCTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAA 2173
||| ||||| |||| | || || ||||||| || ||| | | | ||| | | |
Sbjct 6283 CCTGACGATGGCAGACGCAGGATCATACAGTGTCCAGATAGTCACGAATACCTC-TTCAG 6225
Query 2174 CG-TTTCCAGCTACACGCTGAGGATCTTC 2201
| ||| ||| ||||| ||||||||||||
Sbjct 6224 TGTTTTTCAGTTACACTCTGAGGATCTTC 6196
Score = 91.5 bits (100), Expect = 2e-13
Identities = 223/331 (67%), Gaps = 23/331 (7%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| ||||| ||||| ||| |||| ||||| || |||||||| |||||
Sbjct 22098 GTTTCACAAATGAGCTCAACCCCATCGATGGTGACCGGGGTTCTGGGGGAGTCGGTAACT 22039
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| ||||| | ||||| || | ||| ||||| | ||||||||||||| |||||||
Sbjct 22038 CTTGCCCTGAAGTTTCCTGCAAGAGAGGAGATCGACTCCATCACCTGGCTTCACAACGGA 21979
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || ||| ||| || || || | || || ||| | || |
Sbjct 21978 ACATCTATCATCTTCATACAGCCAAATGAAG-CACGA--------ATCATGGTGACAGCT 21928
Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115
|| |||| || ||| |||| || ||| |||| ||||||| | || || | |||||
Sbjct 21927 CCCAAAC--GGAAAGATAGACTGAAGGTCATCCAGTTCTACTCCTTGCAGCTCAACAACC 21870
Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGAT-GTCCTCCGAG-ACCACAGTTAA 2173
| |||| ||| | || || ||||||| || ||| ||| |||| ||| | |
Sbjct 21869 TGACAATGGCAGATGCAGGATCATACAGTGTCCAGATAGTC--ACGAGTACCTC---TTC 21815
Query 2174 CG---TTTCCAGCTACACGCTGAGGATCTTC 2201
|| ||||||| ||||| ||||||||||||
Sbjct 21814 CGTGTTTTCCAGTTACACTCTGAGGATCTTC 21784
>seq108
Length=4508817
Score = 89.7 bits (98), Expect = 6e-13
Identities = 116/156 (74%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATATCATCATCA 177737
||||||||||| ||||| ||| |||||||||| ||||| || | | || | | |||
Sbjct 4377184 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAATAACCAGAGTCTA-CGGC-TCA 4377241
Query 177738 CAGA--AAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAG 177793
|||| | || |||||| || |||| | | ||||||| |||||||| ||| |||||
Sbjct 4377242 CAGAGCAGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCGTCAGGAGAG 4377301
Query 177794 AGGATTTGGGACGACATCACTGTGAGGTCTCCAACC 177829
||||| || |||| ||||||||||||||||
Sbjct 4377302 AGGATGCCGGGGATTATCAGTGTGAGGTCTCCAACC 4377337
>seq472
Length=8883
Score = 86.0 bits (94), Expect = 8e-12
Identities = 117/157 (75%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATAT-CATCATC 177736
||||||||||| ||||| ||| |||||||||| ||||| || | ||| | ||| |
Sbjct 7139 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAATAACCAGAGTATCTGGCTCA-C 7197
Query 177737 ACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAGA 177794
| || || |||||| || |||| | | ||||||| |||||||| ||| ||| ||
Sbjct 7198 AGAGCGGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCTGTCAGGAGGGA 7257
Query 177795 GGATTTGGGACGA-CATCACTGTGAGGTCTCCAACCT 177830
|||| || ||| |||| |||||||||||||||||
Sbjct 7258 GGATGCTGG-CGATTATCAGTGTGAGGTCTCCAACCT 7293
>seq13
Length=35552856
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | || |||||||| ||| ||||||||||| || || | |||
Sbjct 34076059 CCCTCATGCTGCACATGGCACGTGTATCTCCGCTCCTCTCCAGAAGGCACCACCACAGCC 34076118
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
||||| || || || ||||| ||||| || || | || || | ||| || || ||
Sbjct 34076119 ACCCACTTCTGGAAGGTCCCGTCTCCTGCAGGCCTGGTCTCCACAAACTCGGTGTCCTGG 34076178
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | || || ||||| || | ||| || | | || || || || || || ||||||
Sbjct 34076179 GTCAGGTCCTCCCCGTCCCGCTGCCAGGTCAGAGTGATCTCCGCAGGGTAGAAGCCCAAA 34076238
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 34076239 GCCCAGCACC 34076248
>seq296
Length=20786
Score = 82.4 bits (90), Expect = 1e-10
Identities = 114/156 (73%), Gaps = 4/156 (3%)
Strand=Plus/Minus
Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATAT-CATCATC 177736
||||||||||| ||||| ||| |||||||||| | ||| || | | | | ||| |
Sbjct 14436 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTCAGTAACCAGAGTCTCTGGCTCA-C 14378
Query 177737 ACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAGA 177794
| || | || |||||| || |||| | | ||||||| |||||||| ||| ||||||
Sbjct 14377 AGAGCAGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCGTCAGGAGAGA 14318
Query 177795 GGATTTGGGACGACATCACTGTGAGGTCTCCAACCT 177830
|||| || |||| |||||||||||||||||
Sbjct 14317 GGATGCCGGGGATTATCAGTGTGAGGTCTCCAACCT 14282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629258917534520
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