Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq35 111 2e-19 seq60 107 2e-18 >seq35 Length=24201928 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||||||||| || | ||| ||||| | ||||||||| | Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||| ||||| || |||||||| ||||| || || ||||| | Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860 Query 37318 CTAC 37321 | || Sbjct 13540861 CCAC 13540864 >seq60 Length=14545593 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || |||| ||||| ||||| || | || ||||| | |||| ||| || Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973 Query 37320 ACAA 37323 |||| Sbjct 8428972 ACAA 8428969 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| ||||| |||||||| |||||||||||||| ||||||| | ||||||| Sbjct 8426382 AAGTTTTCATTTACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGTGATATAAAA 8426323 Query 37623 TGTCTTTCATCA 37634 | ||| || ||| Sbjct 8426322 TATCTCTCCTCA 8426311 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 8430692 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 8430634 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 8430633 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 8430600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293943975480