Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5 147 2e-30 seq4 91.5 1e-13 >seq5 Length=63188916 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| |||||||||||||| ||||| || || ||||| |||| | Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | | ||||||||||| ||||||||||| Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATGAG 52112258 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || |||||||||||||| || || || || || || | || Sbjct 52115880 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGACCTAAATC 52115939 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||| | ||||| ||| || ||||| || Sbjct 52115940 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGACGTCTCGGGACCCATTGGCATC 52115999 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||||| || || ||||| || || || || | |||||||| || Sbjct 52116000 CCAGATTTTCACTCCCTTGGAAGACAGTTCGTTAGCATTTGTGGATCC 52116047 >seq4 Length=66015319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || ||||| || |||| || || ||||| | | ||||| |||||| || || Sbjct 56962627 TTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 56962568 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 56962567 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408602226656651