Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 2e-30
seq4 91.5 1e-13
>seq5
Length=63188916
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||
Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| |||||||||||||| ||||| || || ||||| |||| |
Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | | ||||||||||| |||||||||||
Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATGAG 52112258
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || |||||||||||||| || || || || || || | ||
Sbjct 52115880 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGACCTAAATC 52115939
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||||| ||| ||| ||| ||||||| | ||||| ||| || ||||| ||
Sbjct 52115940 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGACGTCTCGGGACCCATTGGCATC 52115999
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317
|||||| || || ||||| || || || || | |||||||| ||
Sbjct 52116000 CCAGATTTTCACTCCCTTGGAAGACAGTTCGTTAGCATTTGTGGATCC 52116047
>seq4
Length=66015319
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || ||||| || |||| || || ||||| | | ||||| |||||| || ||
Sbjct 56962627 TTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 56962568
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| |||||||||||||| ||||||| ||||| || |||
Sbjct 56962567 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408602226656651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |