Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq60 82.4 6e-11 >seq60 Length=14545593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG-CGATAGTTCTGGCATC 101316 || || | |||||| |||||||| ||| | || |||| |||| ||| | | ||| Sbjct 3695498 AACACGAGATGAAGAGTAGATTCCTTT-GAATGCTGTAGTCGGACGAAGCATGTC-CATT 3695555 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 |||| || ||| || |||||||||| | ||| ||||| || || || | | | ||||| Sbjct 3695556 TTCCAGTTTCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCTTCCCTTATC 3695615 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || | ||| |||||| ||| || || || || |||| || |||||| ||| || Sbjct 3695616 CTGGACTTTGCCCTTTACATTTTTTATTGTATCTGATTTTTCAACCTCAAGAATGATGGT 3695675 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||||||||| |||| ||| Sbjct 3695676 CTTTCCC-TAAGGGTTTTTACAAAAATCTTCAT 3695707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263490892059