Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq131 179 7e-40 seq9 136 7e-27 seq74 93.3 8e-14 >seq131 Length=2742456 Score = 179 bits (198), Expect = 7e-40 Identities = 188/245 (77%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 1314381 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 1314324 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | || || | ||||| || ||||| || | |||||| ||||| Sbjct 1314323 GCTCCCGGAGGAGGCCGGCAGTGCTCGACAGACCCGCGTTCTCGGCCTTGAGTGTCTTCA 1314264 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1314263 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 1314204 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 1314203 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 1314144 Query 241623 GAGAC 241627 | ||| Sbjct 1314143 GGGAC 1314139 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || | ||||||||||||| Sbjct 1314344 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGCTCGACAGACCCGCGT 1314285 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 1314284 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 1314230 >seq9 Length=45735564 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 44015364 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 44015305 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| |||| Sbjct 44015304 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAAC 44015245 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 44015244 TTGCGCTTTCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 44015185 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 44015184 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 44015152 >seq74 Length=11665060 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 10648791 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 10648850 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 10648851 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 10648910 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 10648911 ATGGGGGAC 10648919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931496854478080