Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq131 179 7e-40
seq9 136 7e-27
seq74 93.3 8e-14
>seq131
Length=2742456
Score = 179 bits (198), Expect = 7e-40
Identities = 188/245 (77%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442
||| |||| ||||| | || ||||| | || ||||| ||||||||| ||||||||||
Sbjct 1314381 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 1314324
Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502
| ||||| || | | || || | ||||| || ||||| || | |||||| |||||
Sbjct 1314323 GCTCCCGGAGGAGGCCGGCAGTGCTCGACAGACCCGCGTTCTCGGCCTTGAGTGTCTTCA 1314264
Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562
| || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 1314263 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 1314204
Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622
|||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| |
Sbjct 1314203 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 1314144
Query 241623 GAGAC 241627
| |||
Sbjct 1314143 GGGAC 1314139
Score = 84.2 bits (92), Expect = 4e-11
Identities = 87/115 (76%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | || || | |||||||||||||
Sbjct 1314344 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGCTCGACAGACCCGCGT 1314285
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 1314284 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 1314230
>seq9
Length=45735564
Score = 136 bits (150), Expect = 7e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 44015364 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 44015305
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||
Sbjct 44015304 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAAC 44015245
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| ||||| |||| ||| || | |||||| || || | ||| || ||||||||
Sbjct 44015244 TTGCGCTTTCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 44015185
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 44015184 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 44015152
>seq74
Length=11665060
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 10648791 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 10648850
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 10648851 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 10648910
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 10648911 ATGGGGGAC 10648919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931496854478080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |