Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22 113 3e-19 >seq22 Length=30314786 Score = 113 bits (124), Expect = 3e-19 Identities = 225/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||||||||||||| |||||||||| || || | | | |||| || Sbjct 1356042 ACTGCTTGTGAACGTGCTAAGCGTACTCTTTCTTCCAGCACCCAGGCCAGTATTGAGATT 1356101 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 1356102 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1356161 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| ||| | ||| | Sbjct 1356162 TTGAATGCTGACCTATTCCGTGGCACCCTGGACCCTGTAGAGAAAGCTCTTCGGGATGCC 1356221 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || ||||| || || ||||||| ||||| || || || ||||| || | || || Sbjct 1356222 AAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCC 1356281 Query 475736 AAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA 475792 || || |||| ||| | || || |||| || || ||| | | ||| | || | Sbjct 1356282 AAGAT-TCAGAA--GCTTCTACAGGATTTTTTCAACGGAAAAGAACTGAATAAGAGCATC 1356338 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821 || |||||||| |||||||| ||||| || Sbjct 1356339 AACCCTGATGAGGCTGTTGCTTATGGTGC 1356367 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| || || | ||| | || ||| || |||||||| ||| | Sbjct 1357040 ACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCCCGT 1357099 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || ||||| || |||||||| ||||||||||||||||| ||||| || || ||||| || Sbjct 1357100 GGTGTTCCCCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTCTCT 1357159 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 1357160 GCTGTGGATAA 1357170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268046783591876