Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq22 113 3e-19
>seq22
Length=30314786
Score = 113 bits (124), Expect = 3e-19
Identities = 225/329 (68%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||||||||||||||| |||||||||| || || | | | |||| ||
Sbjct 1356042 ACTGCTTGTGAACGTGCTAAGCGTACTCTTTCTTCCAGCACCCAGGCCAGTATTGAGATT 1356101
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | ||||||||| || | |||| |||||| | || |||||||||
Sbjct 1356102 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1356161
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || || ||| ||| | ||| |
Sbjct 1356162 TTGAATGCTGACCTATTCCGTGGCACCCTGGACCCTGTAGAGAAAGCTCTTCGGGATGCC 1356221
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
|| || ||||| || || ||||||| ||||| || || || ||||| || | || ||
Sbjct 1356222 AAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCC 1356281
Query 475736 AAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA 475792
|| || |||| ||| | || || |||| || || ||| | | ||| | || |
Sbjct 1356282 AAGAT-TCAGAA--GCTTCTACAGGATTTTTTCAACGGAAAAGAACTGAATAAGAGCATC 1356338
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821
|| |||||||| |||||||| ||||| ||
Sbjct 1356339 AACCCTGATGAGGCTGTTGCTTATGGTGC 1356367
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| || || | ||| | || ||| || |||||||| ||| |
Sbjct 1357040 ACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCCCGT 1357099
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| ||||| || |||||||| ||||||||||||||||| ||||| || || ||||| ||
Sbjct 1357100 GGTGTTCCCCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTCTCT 1357159
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 1357160 GCTGTGGATAA 1357170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268046783591876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |