Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq82 376 3e-99 seq61 190 2e-43 seq7 89.7 6e-13 >seq82 Length=9772303 Score = 376 bits (416), Expect = 3e-99 Identities = 679/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || ||||| || Sbjct 5823597 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCATGTCAAACTTATTGGC 5823656 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| | | | | || ||||||| || ||| || | || || ||||| || Sbjct 5823657 AAACAGGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCACCTGCTCCAAAAACGCACAC 5823713 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || ||| |||| || ||||| | || || || | ||||||||||| Sbjct 5823714 GGAGCGCACGTGGACCCCGCTGCAGGGGGGGTAGGGGGCGCCCTTGGAAACGTCACCTTC 5823773 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || || || |||||||| || |||| || || || Sbjct 5823774 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAGACATGTCATACTTATA 5823833 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || | ||| || |||||||| || | || Sbjct 5823834 GCTTAAGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAAGAGTGGCCCAGAGATACTC 5823893 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||||||||| || | ||| ||||| |||| | |||| | | || Sbjct 5823894 ATCTGGGCTGTACGTGTCTTTGGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 5823953 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || || | ||| | Sbjct 5823954 CACATACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCCGAAAACAGAGGTGT 5824013 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | ||| || || | | Sbjct 5824014 TTCAAGAGGAGG-GTGCATTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATTAACGACTG 5824072 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | |||| |||||||| | | || | | |||||| | || || ||||| ||| Sbjct 5824073 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 5824132 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | ||| || |||| | |||| || || ||||| || || | ||||| | Sbjct 5824133 TTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATGGGAAAAT 5824192 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | || |||| ||||||||| | || |||| | || |||||| || Sbjct 5824193 CCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTCATGCTGTAGAGGTCCTGCA 5824252 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| || || ||||| || |||||||| || |||| || | || Sbjct 5824253 TGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCGTACACCACACTCTCCAGCTGAC 5824312 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||||||| |||||| || | || || |||| |||||| |||| | | Sbjct 5824313 TGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCAATCACCGCCGCCAAAAAGGA-A 5824371 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| ||||||||| | ||| || | ||||||||| |||||||||| Sbjct 5824372 TC--CTCTGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCCC 5824429 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 5824430 TCAGGAGCCTATCAAGCATTTCAATTTTGTGATGAACCACTATAGAATACGCTATTGGAA 5824489 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || ||| |||| | || || || ||| ||||||| ||| || Sbjct 5824490 ACTCCGCCTCTTCTTTACTGAGGGGTTCTACAAGATATTTGCGCCTCTTGATGAAAGAAG 5824549 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 5824550 TACAATCGCTGGTCATGTTTATATA 5824574 >seq61 Length=14532071 Score = 190 bits (210), Expect = 2e-43 Identities = 222/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || || |||||||| || | || || || ||||| Sbjct 8636822 TCCTGAGATCTTCCCGGAACCAAAGGTATTAAAGAGGCAATTGTAACACCCCTCATCCTC 8636881 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| |||| || | ||| || ||||| | Sbjct 8636882 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTCCTAGCTGAGTGATGTTTAT 8636941 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || ||||| | ||| || || ||||| || ||||||| |||||||||| ||||||| Sbjct 8636942 CTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTT 8637001 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 || || || ||||| || |||||||| || || |||| || || | || || Sbjct 8637002 TTCTGGACTCACAGCCTTGATTTTCTGCCATGTCACAATCAAGACTTCCTGGGAAGTTTG 8637061 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 |||||| ||||| | ||||| || ||||||||||| |||| |||||||| || ||||| Sbjct 8637062 CAGGGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCTCTTTCATCTTGGGTCACGAC 8637121 >seq7 Length=57674156 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| || || | ||||| || |||| | || | Sbjct 20200502 AGATACTTTGCTAGCTCACTGGGAGAGTTGTAGTCTTCCACATGAATGAATGAATCTGCT 20200443 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || || || || | ||| | ||||| | | || Sbjct 20200442 GGAATATAATTTTCATAGTTTTCCCTAGACGGCCCCAGAACAACAGGTACAGAGCCAGCC 20200383 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||| | |||||||| |||||| || |||| |||||||||||||| | Sbjct 20200382 AGAAAAGCATTGTACAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 20200323 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 20200322 AGATAAAATTTGCA 20200309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577196926554120