Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq82 376 3e-99
seq61 190 2e-43
seq7 89.7 6e-13
>seq82
Length=9772303
Score = 376 bits (416), Expect = 3e-99
Identities = 679/985 (69%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||||| ||| ||| || ||||| ||
Sbjct 5823597 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCATGTCAAACTTATTGGC 5823656
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
||||| ||||| | | | | || ||||||| || ||| || | || || ||||| ||
Sbjct 5823657 AAACAGGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCACCTGCTCCAAAAACGCACAC 5823713
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| || ||| |||| || ||||| | || || || | |||||||||||
Sbjct 5823714 GGAGCGCACGTGGACCCCGCTGCAGGGGGGGTAGGGGGCGCCCTTGGAAACGTCACCTTC 5823773
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || || || |||||||| || |||| || || ||
Sbjct 5823774 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAGACATGTCATACTTATA 5823833
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || | || || | ||| || |||||||| || | ||
Sbjct 5823834 GCTTAAGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAAGAGTGGCCCAGAGATACTC 5823893
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||||||||| || | ||| ||||| |||| | |||| | | ||
Sbjct 5823894 ATCTGGGCTGTACGTGTCTTTGGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 5823953
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || | || ||||| || || ||||| || || | ||| |
Sbjct 5823954 CACATACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCCGAAAACAGAGGTGT 5824013
Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| || ||| ||| ||| || ||||| | || | ||| || || | |
Sbjct 5824014 TTCAAGAGGAGG-GTGCATTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATTAACGACTG 5824072
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| |||| |||||||| | | || | | |||||| | || || ||||| |||
Sbjct 5824073 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 5824132
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| | || | ||| || |||| | |||| || || ||||| || || | ||||| |
Sbjct 5824133 TTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATGGGAAAAT 5824192
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| ||||||| | || |||| ||||||||| | || |||| | || |||||| ||
Sbjct 5824193 CCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTCATGCTGTAGAGGTCCTGCA 5824252
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
|||| || | || ||||| || || ||||| || |||||||| || |||| || | ||
Sbjct 5824253 TGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCGTACACCACACTCTCCAGCTGAC 5824312
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827
||||||||||||||||| |||||| || | || || |||| |||||| |||| | |
Sbjct 5824313 TGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCAATCACCGCCGCCAAAAAGGA-A 5824371
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
|| || | ||| ||||||||| | ||| || | ||||||||| ||||||||||
Sbjct 5824372 TC--CTCTGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCCC 5824429
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||||
Sbjct 5824430 TCAGGAGCCTATCAAGCATTTCAATTTTGTGATGAACCACTATAGAATACGCTATTGGAA 5824489
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
|||| | ||| || ||| |||| | || || || ||| ||||||| ||| ||
Sbjct 5824490 ACTCCGCCTCTTCTTTACTGAGGGGTTCTACAAGATATTTGCGCCTCTTGATGAAAGAAG 5824549
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| |||||
Sbjct 5824550 TACAATCGCTGGTCATGTTTATATA 5824574
>seq61
Length=14532071
Score = 190 bits (210), Expect = 2e-43
Identities = 222/300 (74%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229
||| || ||||| || || || || || || |||||||| || | || || || |||||
Sbjct 8636822 TCCTGAGATCTTCCCGGAACCAAAGGTATTAAAGAGGCAATTGTAACACCCCTCATCCTC 8636881
Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289
|| |||||||||||| || || | |||||||| |||| || | ||| || ||||| |
Sbjct 8636882 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTCCTAGCTGAGTGATGTTTAT 8636941
Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349
|| ||||| | ||| || || ||||| || ||||||| |||||||||| |||||||
Sbjct 8636942 CTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTT 8637001
Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409
|| || || ||||| || |||||||| || || |||| || || | || ||
Sbjct 8637002 TTCTGGACTCACAGCCTTGATTTTCTGCCATGTCACAATCAAGACTTCCTGGGAAGTTTG 8637061
Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469
|||||| ||||| | ||||| || ||||||||||| |||| |||||||| || |||||
Sbjct 8637062 CAGGGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCTCTTTCATCTTGGGTCACGAC 8637121
>seq7
Length=57674156
Score = 89.7 bits (98), Expect = 6e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| |||| |||| || |||| || || | ||||| || |||| | || |
Sbjct 20200502 AGATACTTTGCTAGCTCACTGGGAGAGTTGTAGTCTTCCACATGAATGAATGAATCTGCT 20200443
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || |||||||| |||| || || || || | ||| | ||||| | | ||
Sbjct 20200442 GGAATATAATTTTCATAGTTTTCCCTAGACGGCCCCAGAACAACAGGTACAGAGCCAGCC 20200383
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||| | |||||||| |||||| || |||| |||||||||||||| |
Sbjct 20200382 AGAAAAGCATTGTACAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 20200323
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 20200322 AGATAAAATTTGCA 20200309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577196926554120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |