Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq14 104 2e-17
seq30 96.9 3e-15
seq48 82.4 7e-11
>seq14
Length=35217250
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | |||| || || || || || || | ||||| || ||| || |
Sbjct 7097829 GATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTC 7097770
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| | | |||||| | ||| |||||||| | || |||||||| |||| |||||
Sbjct 7097769 GGATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCA 7097710
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || || || ||||| ||| | | |||| || || ||
Sbjct 7097709 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 7097650
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
|||||||||||| || || || || | |||||| ||
Sbjct 7097649 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 7097613
>seq30
Length=26277727
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || || || || || || || || | |||||||| || ||||||
Sbjct 20335944 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGGAAA 20335885
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||| | | | |||| ||||| ||||| || || ||||| || || |||
Sbjct 20335884 CAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACTCTGCAC 20335825
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||| ||| | || ||
Sbjct 20335824 TTGGTCCTGCGCTTGAGGGGGGG 20335802
>seq48
Length=18573065
Score = 82.4 bits (90), Expect = 7e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 138502 TTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGC 138561
||| | ||||||||||| || | ||| |||| ||| |||||||||| |||| ||||
Sbjct 2886225 TTTCTCACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGT 2886284
Query 138562 TCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611
|||| || || || ||||||| ||||||||| || | || || |||||
Sbjct 2886285 TCAATGGACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCAT 2886334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449880239576360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |