Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-17 seq30 96.9 3e-15 seq48 82.4 7e-11 >seq14 Length=35217250 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | |||| || || || || || || | ||||| || ||| || | Sbjct 7097829 GATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTC 7097770 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | |||||| | ||| |||||||| | || |||||||| |||| ||||| Sbjct 7097769 GGATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCA 7097710 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 7097709 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 7097650 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | |||||| || Sbjct 7097649 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 7097613 >seq30 Length=26277727 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || | |||||||| || |||||| Sbjct 20335944 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGGAAA 20335885 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | |||| ||||| ||||| || || ||||| || || ||| Sbjct 20335884 CAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACTCTGCAC 20335825 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||| ||| | || || Sbjct 20335824 TTGGTCCTGCGCTTGAGGGGGGG 20335802 >seq48 Length=18573065 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 138502 TTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGC 138561 ||| | ||||||||||| || | ||| |||| ||| |||||||||| |||| |||| Sbjct 2886225 TTTCTCACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGT 2886284 Query 138562 TCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCAT 138611 |||| || || || ||||||| ||||||||| || | || || ||||| Sbjct 2886285 TCAATGGACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCAT 2886334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880239576360