Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq44 84.2 1e-11
seq30 84.2 1e-11
>seq44
Length=19882732
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||| ||| | |||| ||| ||||| || || |||| || || ||| | ||
Sbjct 2427267 AGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCC 2427326
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || || || |||| | |||||||| | || | ||||||| |||
Sbjct 2427327 TCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCT 2427386
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| |||||| || || || ||| || |||||| | | ||| ||||
Sbjct 2427387 TGGATTTTAGCTTTGAC--ATTCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGG 2427444
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||| | |||||||| ||||||||||| ||
Sbjct 2427445 TCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478
>seq30
Length=26277727
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| |||||||| | |||||||| ||| | || || ||||| ||||| || || ||
Sbjct 20335802 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGAC 20335861
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| || || || |||||||||| | |||||||| | ||
Sbjct 20335862 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 20335921
Query 34871 ACCCCCTCCTTGTC 34884
| |||||||||||
Sbjct 20335922 ATGCCCTCCTTGTC 20335935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325680546520853
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |