Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq44 84.2 1e-11 seq30 84.2 1e-11 >seq44 Length=19882732 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||| ||| | |||| ||| ||||| || || |||| || || ||| | || Sbjct 2427267 AGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCC 2427326 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || |||| | |||||||| | || | ||||||| ||| Sbjct 2427327 TCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCT 2427386 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || ||| || |||||| | | ||| |||| Sbjct 2427387 TGGATTTTAGCTTTGAC--ATTCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGG 2427444 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| | |||||||| ||||||||||| || Sbjct 2427445 TCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478 >seq30 Length=26277727 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||| ||| | || || ||||| ||||| || || || Sbjct 20335802 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGAC 20335861 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || || |||||||||| | |||||||| | || Sbjct 20335862 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 20335921 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 20335922 ATGCCCTCCTTGTC 20335935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325680546520853