Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq13 179 3e-39 seq22 120 2e-21 seq50 104 2e-16 seq11 91.5 1e-12 seq27 89.7 4e-12 >seq13 Length=35552856 Score = 179 bits (198), Expect = 3e-39 Identities = 451/679 (66%), Gaps = 6/679 (1%) Strand=Plus/Minus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| || || ||| | | ||||| | || ||||| ||||| || ||| Sbjct 33279731 TTCCTCTTGAACTCCTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAGTCTTCCCCCCCC 33279672 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | |||| ||||| || | | || | Sbjct 33279671 AGGTGGGTGTCCCCGGCTGTGGCCTTCACCTCAAAAATCCCATCATCTATGGTCAGGACG 33279612 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT--TGTCTT 282329 | |||||| || || ||||||| |||||| || || |||| | ||| || | | Sbjct 33279611 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACATGTCTCTCTCCCTGACCT 33279552 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||| | | ||| ||||| |||| ||||||||| || |||||||| |||||||| | || Sbjct 33279551 GCTTTATCT-AAG-CCATAGGCAATAGCAGCAGCTGTCGGTTCATTGATAATTCTTAGAA 33279494 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 |||| ||||| ||||| |||||||| || ||||| || | ||| || || || |||| Sbjct 33279493 CATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAAT 33279434 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 | || || ||||| || || |||| || || | || | | |||| || || | Sbjct 33279433 AAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAAAAAAGCCTCAGCAGTCT 33279374 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCA 282568 ||||| ||| | | | ||| || ||||||| || || | | | |||| | || Sbjct 33279373 CCTTCATCTTAGTCAGTACCATGGAAGAAATTTCCTCAGG-GTAGAAAGCTTTTTTCTCC 33279315 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 || ||| || || | | || || || | || || |||| ||| |||||| Sbjct 33279314 CCTTTATAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGAAAAGGCCAA 33279255 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 ||||||||||||||| || | |||||||| | || || || | ||||| ||| Sbjct 33279254 AGTTTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCGATCAGACGTTTGGCA 33279195 Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748 ||||| | ||| || ||||| | || | || | ||||| ||||| |||||||| Sbjct 33279194 TCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCCCCAATCAGC 33279135 Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 | || || ||||| || | || || || || |||||||| || || || || || Sbjct 33279134 CGCTCAGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGATTGCCCTGGTCGTTGGCG 33279075 Query 282809 ATAATTTCAACTTTACCAT 282827 || || || || || |||| Sbjct 33279074 ATGATCTCCACCTTGCCAT 33279056 >seq22 Length=30314786 Score = 120 bits (132), Expect = 2e-21 Identities = 361/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 1356367 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 1356308 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||||| | ||| | ||| || ||||| | || || || || | ||||| Sbjct 1356307 AAATCCTGTAGAAGCT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 1356249 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| || || || || || | |||| | | |||| || || || || || Sbjct 1356248 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCCCGAAGAGCTTTCTCTACAGGGTCCAG 1356189 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | || | ||| | | | |||||| ||| || | |||| || | || Sbjct 1356188 GGTGCCACGGAATAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 1356129 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 1356128 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 1356069 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATT 282131 | ||| |||||||||||||| || || | || | || | || || | || | | Sbjct 1356068 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGACGGACAGCCCTCTTGTTCTCACT 1356009 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 282189 ||| || | |||| || | |||||| ||| ||| | | ||| | || | || Sbjct 1356008 GATG----TCCTTCTTATGCTTGCGCTTGAACTCTGCAATAAA--ATGGTTGACCATCCG 1355955 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||||| ||||| || ||||| | || | ||| | |||| | | || | ||| | Sbjct 1355954 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTAACCTCGAAGAT 1355895 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| || | || | |||||| || ||||| || | ||||| || || Sbjct 1355894 TCCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 1355835 Query 282310 TACATTCATTTC 282321 || || |||| Sbjct 1355834 CACGTTTCTTTC 1355823 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1355722 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGCACA 1355663 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 1355662 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 1355603 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | ||| |||| Sbjct 1355602 GCAGGTACTGTGACAACAGCAT 1355581 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | |||| |||| | || || || || || |||| Sbjct 1354729 CAAAAACTGTGTTGGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCGTCACCGATCAATC 1354670 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| || || ||||| | ||||| ||| || || || || ||||||||||| || | Sbjct 1354669 GTTCGGTGTCAGTAAAGGCGACATAGCTTGGGGTGGTTCGGTTTCCTTGATCATTGGCTA 1354610 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| || | || | ||||| |||||| | || || || | ||||| Sbjct 1354609 TTATTTCCACTTTTCCGTGCTGGAAAACACCCACACAAGAGTAGGTGGTGCCAAGATCAA 1354550 Query 282870 TACCAA 282875 | |||| Sbjct 1354549 TGCCAA 1354544 >seq50 Length=18376352 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| |||||||| ||||||||||| || ||| | || |||||| | Sbjct 2235740 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2235799 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 2235800 GTGGTTGGGAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2235859 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 2235860 GAAGCTTCTCATAAA 2235874 >seq11 Length=39176111 Score = 91.5 bits (100), Expect = 1e-12 Identities = 209/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||| ||||||||| ||| ||||| || ||| ||| ||| || ||| | || |||| Sbjct 28110193 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCTTTGAGCTTTTTGTCTTCCTCAGCAAA 28110250 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 28110251 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 28110304 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 28110305 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCTTTGTCTTCAGCTGTCAC 28110361 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 28110362 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 28110421 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || ||| ||||||| | ||| ||||| || | Sbjct 28110422 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAAGAGGTGATTGTCTTTCGTCAGGGG 28110481 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 28110482 TCGTTCACC 28110490 >seq27 Length=27778364 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 20578383 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 20578442 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 20578443 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 20578502 Query 131301 GA 131302 || Sbjct 20578503 GA 20578504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740478841345662