Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq13 179 3e-39
seq22 120 2e-21
seq50 104 2e-16
seq11 91.5 1e-12
seq27 89.7 4e-12
>seq13
Length=35552856
Score = 179 bits (198), Expect = 3e-39
Identities = 451/679 (66%), Gaps = 6/679 (1%)
Strand=Plus/Minus
Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211
|| |||||||| || || ||| | | ||||| | || ||||| ||||| || |||
Sbjct 33279731 TTCCTCTTGAACTCCTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAGTCTTCCCCCCCC 33279672
Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271
| | || | || | || || | || | |||| ||||| || | | || |
Sbjct 33279671 AGGTGGGTGTCCCCGGCTGTGGCCTTCACCTCAAAAATCCCATCATCTATGGTCAGGACG 33279612
Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT--TGTCTT 282329
| |||||| || || ||||||| |||||| || || |||| | ||| || | |
Sbjct 33279611 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACATGTCTCTCTCCCTGACCT 33279552
Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389
| ||| | | ||| ||||| |||| ||||||||| || |||||||| |||||||| | ||
Sbjct 33279551 GCTTTATCT-AAG-CCATAGGCAATAGCAGCAGCTGTCGGTTCATTGATAATTCTTAGAA 33279494
Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449
|||| ||||| ||||| |||||||| || ||||| || | ||| || || || ||||
Sbjct 33279493 CATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAAT 33279434
Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509
| || || ||||| || || |||| || || | || | | |||| || || |
Sbjct 33279433 AAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAAAAAAGCCTCAGCAGTCT 33279374
Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCA 282568
||||| ||| | | | ||| || ||||||| || || | | | |||| | ||
Sbjct 33279373 CCTTCATCTTAGTCAGTACCATGGAAGAAATTTCCTCAGG-GTAGAAAGCTTTTTTCTCC 33279315
Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628
|| ||| || || | | || || || | || || |||| ||| ||||||
Sbjct 33279314 CCTTTATAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGAAAAGGCCAA 33279255
Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688
||||||||||||||| || | |||||||| | || || || | ||||| |||
Sbjct 33279254 AGTTTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCGATCAGACGTTTGGCA 33279195
Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748
||||| | ||| || ||||| | || | || | ||||| ||||| ||||||||
Sbjct 33279194 TCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCCCCAATCAGC 33279135
Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808
| || || ||||| || | || || || || |||||||| || || || || ||
Sbjct 33279134 CGCTCAGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGATTGCCCTGGTCGTTGGCG 33279075
Query 282809 ATAATTTCAACTTTACCAT 282827
|| || || || || ||||
Sbjct 33279074 ATGATCTCCACCTTGCCAT 33279056
>seq22
Length=30314786
Score = 120 bits (132), Expect = 2e-21
Identities = 361/552 (65%), Gaps = 14/552 (3%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| |||||||| |||||||| || | | | ||| |||| ||| || ||||||
Sbjct 1356367 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 1356308
Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|||| ||||| | ||| | ||| || ||||| | || || || || | |||||
Sbjct 1356307 AAATCCTGTAGAAGCT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 1356249
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
||||| | ||| || || || || || | |||| | | |||| || || || || ||
Sbjct 1356248 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCCCGAAGAGCTTTCTCTACAGGGTCCAG 1356189
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015
| | || | ||| | | | |||||| ||| || | |||| || | ||
Sbjct 1356188 GGTGCCACGGAATAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 1356129
Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075
| || |||||||| | | ||||||| ||||| | | || || ||||| ||
Sbjct 1356128 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 1356069
Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATT 282131
| ||| |||||||||||||| || || | || | || | || || | || | |
Sbjct 1356068 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGACGGACAGCCCTCTTGTTCTCACT 1356009
Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 282189
||| || | |||| || | |||||| ||| ||| | | ||| | || | ||
Sbjct 1356008 GATG----TCCTTCTTATGCTTGCGCTTGAACTCTGCAATAAA--ATGGTTGACCATCCG 1355955
Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249
|||||||| ||||| || ||||| | || | ||| | |||| | | || | ||| |
Sbjct 1355954 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTAACCTCGAAGAT 1355895
Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309
||||||||||| || | || | |||||| || ||||| || | ||||| || ||
Sbjct 1355894 TCCATCTTCAATAGTGAGAATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 1355835
Query 282310 TACATTCATTTC 282321
|| || ||||
Sbjct 1355834 CACGTTTCTTTC 1355823
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 1355722 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGCACA 1355663
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| |||| |||||||| || || || | || || || ||||| ||
Sbjct 1355662 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 1355603
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| || || | ||| ||||
Sbjct 1355602 GCAGGTACTGTGACAACAGCAT 1355581
Score = 87.8 bits (96), Expect = 1e-11
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||||| || ||||| || || | |||| |||| | || || || || || ||||
Sbjct 1354729 CAAAAACTGTGTTGGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCGTCACCGATCAATC 1354670
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
|||| || || ||||| | ||||| ||| || || || || ||||||||||| || |
Sbjct 1354669 GTTCGGTGTCAGTAAAGGCGACATAGCTTGGGGTGGTTCGGTTTCCTTGATCATTGGCTA 1354610
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||| ||||| || | || | ||||| |||||| | || || || | |||||
Sbjct 1354609 TTATTTCCACTTTTCCGTGCTGGAAAACACCCACACAAGAGTAGGTGGTGCCAAGATCAA 1354550
Query 282870 TACCAA 282875
| ||||
Sbjct 1354549 TGCCAA 1354544
>seq50
Length=18376352
Score = 104 bits (114), Expect = 2e-16
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || |||| |||||||| ||||||||||| || ||| | || |||||| |
Sbjct 2235740 TGTACACTTATCCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2235799
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| |
Sbjct 2235800 GTGGTTGGGAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2235859
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 2235860 GAAGCTTCTCATAAA 2235874
>seq11
Length=39176111
Score = 91.5 bits (100), Expect = 1e-12
Identities = 209/309 (68%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322
|||| ||||||||| ||| ||||| || ||| ||| ||| || ||| | || ||||
Sbjct 28110193 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCTTTGAGCTTTTTGTCTTCCTCAGCAAA 28110250
Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379
| | ||| || ||| ||| || ||||||| |||||| | | ||||||
Sbjct 28110251 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 28110304
Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433
||| ||||| || || || || |||||| ||| ||| || | || |||||
Sbjct 28110305 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCTTTGTCTTCAGCTGTCAC 28110361
Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493
|||||| ||||| |||| | ||||| ||||||||||| || |||||||| | |
Sbjct 28110362 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 28110421
Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553
|||||| || || || || || ||| ||||||| | ||| ||||| || |
Sbjct 28110422 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAAGAGGTGATTGTCTTTCGTCAGGGG 28110481
Query 281554 TCGTTCACC 281562
|||||||||
Sbjct 28110482 TCGTTCACC 28110490
>seq27
Length=27778364
Score = 89.7 bits (98), Expect = 4e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240
|||| || ||||| ||||| ||||| ||||||||| | || || | || |||||||
Sbjct 20578383 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 20578442
Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300
| || ||||| ||| | || ||| ||||| || || ||||||||||| || |||||||
Sbjct 20578443 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 20578502
Query 131301 GA 131302
||
Sbjct 20578503 GA 20578504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740478841345662
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