Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 9e-16 >seq60 Length=14545593 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| |||||||| | || |||||| | || |||||||| |||| ||| | || Sbjct 8692958 TCCAGCATATGGGGGCCGACGTGTGATGGCCTCGACCGCATTGTTGAGCGCTGTAACTTG 8692899 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||| ||| | | |||||||||||||| ||||||| || | Sbjct 8692898 CCCGAGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTTGC 8692840 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| |||| || || ||||| |||| | |||| | ||||||| || |||| Sbjct 8692839 TGCTGCTTCTACTTTCAACGGGTTCCAGAGGCCAACTATCTACTATGTGATGTCAG 8692784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463527712934160