Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq30 199 3e-46
>seq30
Length=26277727
Score = 199 bits (220), Expect = 3e-46
Identities = 507/757 (67%), Gaps = 72/757 (10%)
Strand=Plus/Plus
Query 1040 GTCTAGTTGTTC---TGGTTTCTTGTAAATATGCCCACAGCTCTAGCTTCTGGTCTGAAA 1096
||||||||| || | ||||||| | ||| ||||||| |||||||| |||||||||
Sbjct 18270381 GTCTAGTTGCTCCCATCCTTTCTTGGCA-TAT--CCACAGCCCTAGCTTCAGGTCTGAAA 18270437
Query 1097 AAGAGTAGGTTTCTCTTGAGAGTTAA-GGAAGGCATTTTAAAGAAAAGGCTTAGaaaaaa 1155
| ||||||| ||| | ||| || ||||||||||||||||||| |||| || | |
Sbjct 18270438 A-GAGTAGGCCTCTTCCG-GAGGCAATGGAAGGCATTTTAAAGAAATAGCTTGAAATAGA 18270495
Query 1156 aaTCTGGTGGGCACTTACATATTCTTCCATAAGTTTTGAAAATGAGAACTGTAGTTCTGT 1215
||||| |||||||||| || || |||| |||||| | | ||| | || ||| ||
Sbjct 18270496 AATCTCTAGGGCACTTACGTAGTCCTCCAAAAGTTTCTTAGACGAGTTCCATAATTCCGT 18270555
Query 1216 GATTACAGCTGATTGTATGTCCCGTGGTAGTGGATG----------GCCGT--GGGAGGA 1263
||||| ||| | ||||| |||| |||| || ||| | | |||||
Sbjct 18270556 GATTATTGCTCCT---ATGTCTTCTGGTTGTGGTTGATTGGTGGGTGCCATATGAGAGGA 18270612
Query 1264 GAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAAT 1323
| |||| ||| ||||||||||||||||||||||| || | ||| || | |||
Sbjct 18270613 CATCAAGCTTCCCATACAGCAGAGCAGGAACAGGGCAACCCGGGTGGATCCTGGAGAAAG 18270672
Query 1324 AGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAACCTGCCCA----AGCTTTCA 1379
||| | |||| | | | | ||| | ||| |||||||| ||||| |
Sbjct 18270673 AGAATGATGCTGTGAGGCACATAG--GCCAAACACCC---CCTGCCCACCTCAGCTTCAA 18270727
Query 1380 CCACCGAAGCTG----TG--------CCGGACTGAGCCCCATCCAG--TCTTTCTCTTTG 1425
||| |||| | || | || | ||||||| ||||| |||| |||| ||
Sbjct 18270728 TCACTTAAGCCGCTGTTGAGCAACCACTGGGCCGAGCCCC-TCCAGAGTCTTCCTCTCTG 18270786
Query 1426 TCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTATCGATACCTGA 1485
| | || || ||| | |||| || | || ||| | | || | | ||||||
Sbjct 18270787 GGTGGTGAGACAAGACTACGCCCA--AGAAACAGAGGCAGCAAGATGCAGTGGTACCTGT 18270844
Query 1486 GGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTGCTAGAGTGAG 1545
| |||| || || | |||||||| ||||| |||| ||||||||| || ||| ||
Sbjct 18270845 GTGGGAGACCATGGTGAGAGAGAGCAAGGCCT--GCTTCAGCAACAGCTTCTTGAGCCAG 18270902
Query 1546 ATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGGAGGAG---C 1602
|| || | || || | | |||| | ||||||||||| |||||| |||| || |
Sbjct 18270903 ATATGTTTGCCATGGTCCTCGGGAGAT--ATATAAAGGGCCAGTTGTGAGGAAGAAGAAC 18270960
Query 1603 ACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACA-TTTCAA 1650
| | || || |||||| || ||| | ||| ||||| |||||| ||||||
Sbjct 18270961 AGTTAACGTCCCGCCCCTGGCAAAATTATTGCTCAGCTTTTCTCCAGAAAACACTTTCAA 18271020
Query 1651 ATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGAAGTTACCCTT 1707
| || ||||| | | ||| | ||||||||||| |||||||| ||| ||||||||
Sbjct 18271021 AATTCTGCCACCCAAGGCTGGGTGAAAGCAAGGCTGGAAGGAAATGCTGAGGTTACCCTC 18271080
Query 1708 AAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744
||| | ||||||||| |||| || | || | ||||||
Sbjct 18271081 AAGGTAGGCAGATGCCTGACTCAGTACAGACACACAC 18271117
Score = 111 bits (122), Expect = 1e-19
Identities = 211/305 (69%), Gaps = 23/305 (8%)
Strand=Plus/Plus
Query 344 TTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCAGGCTT 402
|| ||||||||| |||||||| ||| |||||||||||| ||| | |||||| | ||||
Sbjct 18268718 TTTCTGCCATTCCAAAAGGAATAGGTTCAACCACATGGCCTTAACTGACCTACTCGGCTC 18268777
Query 403 CAGTGCCCACTAATTT---------CAGGCACTTTGAAAACATTTCTAAAACACACTGTA 453
||| | || |||| |||||||| ||||||| | ||||| | | |
Sbjct 18268778 CAGAGTTCAAAGATTTAACACGTTCCAGGCACTCTGAAAACTGTCGTAAAATAGTCAAGA 18268837
Query 454 TGAACACttttt--tttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCGCG 505
|||| ||||| || || || | |||||||||| ||||| | |||| |||
Sbjct 18268838 TGAAT-CTTTTACATTCGA-AGGTATCTGTAGGCACAGAAACTTCTGTTTCTGATGCATT 18268895
Query 506 TTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACTATTTGTGTCATTAAA 565
||| | || ||||| | || || || |||| || | | || ||| ||| ||
Sbjct 18268896 TTGAAGTTTGAGTTTGTCAAGCTGTTCTATGATTTCT-TGGACCTCACTGTT--ATTTAA 18268952
Query 566 AAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG 625
|||| |||||| || | ||||||||||||| || ||| |||||||||||| ||||||
Sbjct 18268953 TAATGGTTTGATTGCCTTGAAATAAGGCAGGAAGGTTGAGCTGTTGATGTTGCTTGGTGG 18269012
Query 626 CTGGG 630
||||
Sbjct 18269013 TTGGG 18269017
Score = 95.1 bits (104), Expect = 1e-14
Identities = 88/110 (80%), Gaps = 5/110 (5%)
Strand=Plus/Plus
Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230
||||| || |||| ||| |||| ||||||||||| |||||||||||||||| || ||||
Sbjct 18268331 CACAAAATCCAAAGCAGATTATGAGAAAAATTCAATATAATTTATTAAATAGGTTCCAAG 18268390
Query 231 GGCTTCTTTAAGAAGCATTAACAA-TCTAACAACATTTTATAAATAACAA 279
|||| || ||| ||||||||||| ||| | ||| ||||||| |||
Sbjct 18268391 GGCTCCTCCAAGGAGCATTAACAACTCTCAATACA----ATAAATATCAA 18268436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438543077066000
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