Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq30 199 3e-46 >seq30 Length=26277727 Score = 199 bits (220), Expect = 3e-46 Identities = 507/757 (67%), Gaps = 72/757 (10%) Strand=Plus/Plus Query 1040 GTCTAGTTGTTC---TGGTTTCTTGTAAATATGCCCACAGCTCTAGCTTCTGGTCTGAAA 1096 ||||||||| || | ||||||| | ||| ||||||| |||||||| ||||||||| Sbjct 18270381 GTCTAGTTGCTCCCATCCTTTCTTGGCA-TAT--CCACAGCCCTAGCTTCAGGTCTGAAA 18270437 Query 1097 AAGAGTAGGTTTCTCTTGAGAGTTAA-GGAAGGCATTTTAAAGAAAAGGCTTAGaaaaaa 1155 | ||||||| ||| | ||| || ||||||||||||||||||| |||| || | | Sbjct 18270438 A-GAGTAGGCCTCTTCCG-GAGGCAATGGAAGGCATTTTAAAGAAATAGCTTGAAATAGA 18270495 Query 1156 aaTCTGGTGGGCACTTACATATTCTTCCATAAGTTTTGAAAATGAGAACTGTAGTTCTGT 1215 ||||| |||||||||| || || |||| |||||| | | ||| | || ||| || Sbjct 18270496 AATCTCTAGGGCACTTACGTAGTCCTCCAAAAGTTTCTTAGACGAGTTCCATAATTCCGT 18270555 Query 1216 GATTACAGCTGATTGTATGTCCCGTGGTAGTGGATG----------GCCGT--GGGAGGA 1263 ||||| ||| | ||||| |||| |||| || ||| | | ||||| Sbjct 18270556 GATTATTGCTCCT---ATGTCTTCTGGTTGTGGTTGATTGGTGGGTGCCATATGAGAGGA 18270612 Query 1264 GAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAAT 1323 | |||| ||| ||||||||||||||||||||||| || | ||| || | ||| Sbjct 18270613 CATCAAGCTTCCCATACAGCAGAGCAGGAACAGGGCAACCCGGGTGGATCCTGGAGAAAG 18270672 Query 1324 AGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAACCTGCCCA----AGCTTTCA 1379 ||| | |||| | | | | ||| | ||| |||||||| ||||| | Sbjct 18270673 AGAATGATGCTGTGAGGCACATAG--GCCAAACACCC---CCTGCCCACCTCAGCTTCAA 18270727 Query 1380 CCACCGAAGCTG----TG--------CCGGACTGAGCCCCATCCAG--TCTTTCTCTTTG 1425 ||| |||| | || | || | ||||||| ||||| |||| |||| || Sbjct 18270728 TCACTTAAGCCGCTGTTGAGCAACCACTGGGCCGAGCCCC-TCCAGAGTCTTCCTCTCTG 18270786 Query 1426 TCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTATCGATACCTGA 1485 | | || || ||| | |||| || | || ||| | | || | | |||||| Sbjct 18270787 GGTGGTGAGACAAGACTACGCCCA--AGAAACAGAGGCAGCAAGATGCAGTGGTACCTGT 18270844 Query 1486 GGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTGCTAGAGTGAG 1545 | |||| || || | |||||||| ||||| |||| ||||||||| || ||| || Sbjct 18270845 GTGGGAGACCATGGTGAGAGAGAGCAAGGCCT--GCTTCAGCAACAGCTTCTTGAGCCAG 18270902 Query 1546 ATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGGAGGAG---C 1602 || || | || || | | |||| | ||||||||||| |||||| |||| || | Sbjct 18270903 ATATGTTTGCCATGGTCCTCGGGAGAT--ATATAAAGGGCCAGTTGTGAGGAAGAAGAAC 18270960 Query 1603 ACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACA-TTTCAA 1650 | | || || |||||| || ||| | ||| ||||| |||||| |||||| Sbjct 18270961 AGTTAACGTCCCGCCCCTGGCAAAATTATTGCTCAGCTTTTCTCCAGAAAACACTTTCAA 18271020 Query 1651 ATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGAAGTTACCCTT 1707 | || ||||| | | ||| | ||||||||||| |||||||| ||| |||||||| Sbjct 18271021 AATTCTGCCACCCAAGGCTGGGTGAAAGCAAGGCTGGAAGGAAATGCTGAGGTTACCCTC 18271080 Query 1708 AAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744 ||| | ||||||||| |||| || | || | |||||| Sbjct 18271081 AAGGTAGGCAGATGCCTGACTCAGTACAGACACACAC 18271117 Score = 111 bits (122), Expect = 1e-19 Identities = 211/305 (69%), Gaps = 23/305 (8%) Strand=Plus/Plus Query 344 TTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCAGGCTT 402 || ||||||||| |||||||| ||| |||||||||||| ||| | |||||| | |||| Sbjct 18268718 TTTCTGCCATTCCAAAAGGAATAGGTTCAACCACATGGCCTTAACTGACCTACTCGGCTC 18268777 Query 403 CAGTGCCCACTAATTT---------CAGGCACTTTGAAAACATTTCTAAAACACACTGTA 453 ||| | || |||| |||||||| ||||||| | ||||| | | | Sbjct 18268778 CAGAGTTCAAAGATTTAACACGTTCCAGGCACTCTGAAAACTGTCGTAAAATAGTCAAGA 18268837 Query 454 TGAACACttttt--tttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCGCG 505 |||| ||||| || || || | |||||||||| ||||| | |||| ||| Sbjct 18268838 TGAAT-CTTTTACATTCGA-AGGTATCTGTAGGCACAGAAACTTCTGTTTCTGATGCATT 18268895 Query 506 TTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACTATTTGTGTCATTAAA 565 ||| | || ||||| | || || || |||| || | | || ||| ||| || Sbjct 18268896 TTGAAGTTTGAGTTTGTCAAGCTGTTCTATGATTTCT-TGGACCTCACTGTT--ATTTAA 18268952 Query 566 AAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG 625 |||| |||||| || | ||||||||||||| || ||| |||||||||||| |||||| Sbjct 18268953 TAATGGTTTGATTGCCTTGAAATAAGGCAGGAAGGTTGAGCTGTTGATGTTGCTTGGTGG 18269012 Query 626 CTGGG 630 |||| Sbjct 18269013 TTGGG 18269017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||| ||| |||| ||||||||||| |||||||||||||||| || |||| Sbjct 18268331 CACAAAATCCAAAGCAGATTATGAGAAAAATTCAATATAATTTATTAAATAGGTTCCAAG 18268390 Query 231 GGCTTCTTTAAGAAGCATTAACAA-TCTAACAACATTTTATAAATAACAA 279 |||| || ||| ||||||||||| ||| | ||| ||||||| ||| Sbjct 18268391 GGCTCCTCCAAGGAGCATTAACAACTCTCAATACA----ATAAATATCAA 18268436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438543077066000