Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14 118 2e-21 seq30 113 9e-20 seq115 104 5e-17 seq7 100 6e-16 seq9 84.2 4e-11 >seq14 Length=35217250 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | || ||||| ||||| Sbjct 7097626 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 7097685 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| |||| ||||||||||||| || ||||| Sbjct 7097686 TTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATTCTGGATCTTG 7097745 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||| || |||| || |||| ||||| || || | || || ||||| || || Sbjct 7097746 GCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCGATGGTCTTTCCCGTA 7097805 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | | || || || |||||||| Sbjct 7097806 AGGATTTTCACGAAAATCTGCAT 7097828 >seq30 Length=26277727 Score = 113 bits (124), Expect = 9e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || ||||| ||||| || ||||||||||||||||||||||| || || |||||||| Sbjct 20335801 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGA 20335860 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||| ||||| | || || || || || || Sbjct 20335861 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 20335920 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 || || ||||| || || ||||| || || Sbjct 20335921 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 20335950 >seq115 Length=4025681 Score = 104 bits (114), Expect = 5e-17 Identities = 109/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| |||| || || || | | ||||| | | | | || |||| |||||| Sbjct 2519652 TGAAGAGTGTATTCCTTTTGAATGT---AGTCAGACAAAGTACATCCAGCTTCCAGTTGT 2519708 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||| Sbjct 2519709 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTCA 2519768 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||| ||| | ||||| Sbjct 2519769 GCCTTTACATATTCTGTTGTATC 2519791 >seq7 Length=57674156 Score = 100 bits (110), Expect = 6e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 60306 GTCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATT 60365 ||||||||||||| ||||| |||||||||||||| |||||||| ||||||| | || | Sbjct 6004528 GTCAAGCATTTTTTGGAGCCCAGTTGAATTCCTTCATCCATGTGGTTATGTACTCCTACT 6004469 Query 60366 ATGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTA 60425 |||| | | |||| ||| || | || | |||||| | |||||||| || || || | Sbjct 6004468 ATGGGTTAACTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGA 6004409 Query 60426 CTATAATGCA 60435 |||| |||| Sbjct 6004408 CTATGTTGCA 6004399 >seq9 Length=45735564 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| ||||| ||||| || ||| | || || || || Sbjct 43757214 CCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCG 43757273 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 43757274 AGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 43757317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981788366586493