Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq14 118 2e-21
seq30 113 9e-20
seq115 104 5e-17
seq7 100 6e-16
seq9 84.2 4e-11
>seq14
Length=35217250
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || || ||||| | | | | || ||||| |||||
Sbjct 7097626 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 7097685
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| |||||||| ||||| |||| ||||||||||||| || |||||
Sbjct 7097686 TTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATTCTGGATCTTG 7097745
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||| || |||| || |||| ||||| || || | || || ||||| || ||
Sbjct 7097746 GCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCGATGGTCTTTCCCGTA 7097805
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| | || || || ||||||||
Sbjct 7097806 AGGATTTTCACGAAAATCTGCAT 7097828
>seq30
Length=26277727
Score = 113 bits (124), Expect = 9e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || ||||| ||||| || ||||||||||||||||||||||| || || ||||||||
Sbjct 20335801 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGA 20335860
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| ||||| ||||| | || || || || || ||
Sbjct 20335861 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 20335920
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTT 82732
|| || ||||| || || ||||| || ||
Sbjct 20335921 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 20335950
>seq115
Length=4025681
Score = 104 bits (114), Expect = 5e-17
Identities = 109/143 (76%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| |||| || || || | | ||||| | | | | || |||| ||||||
Sbjct 2519652 TGAAGAGTGTATTCCTTTTGAATGT---AGTCAGACAAAGTACATCCAGCTTCCAGTTGT 2519708
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| |||||||| ||||| ||||| |||||||||||||| || ||||
Sbjct 2519709 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTCA 2519768
Query 82728 GCTTTTACATTTTCAATCGTATC 82750
|| ||||||| ||| | |||||
Sbjct 2519769 GCCTTTACATATTCTGTTGTATC 2519791
>seq7
Length=57674156
Score = 100 bits (110), Expect = 6e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 60306 GTCAAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATT 60365
||||||||||||| ||||| |||||||||||||| |||||||| ||||||| | || |
Sbjct 6004528 GTCAAGCATTTTTTGGAGCCCAGTTGAATTCCTTCATCCATGTGGTTATGTACTCCTACT 6004469
Query 60366 ATGGTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTA 60425
|||| | | |||| ||| || | || | |||||| | |||||||| || || || |
Sbjct 6004468 ATGGGTTAACTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGA 6004409
Query 60426 CTATAATGCA 60435
|||| ||||
Sbjct 6004408 CTATGTTGCA 6004399
>seq9
Length=45735564
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|| ||||| ||||| || || ||||| ||||| ||||| || ||| | || || || ||
Sbjct 43757214 CCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCG 43757273
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || || ||||||||||||| ||||| ||||| ||||||||
Sbjct 43757274 AGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 43757317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981788366586493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |