Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq82 84.2 4e-11 seq7 84.2 4e-11 >seq82 Length=9772303 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 49059 CTGAAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCA 49118 || |||||||| | || |||||| || || |||||||| ||| || || |||||||| Sbjct 7100294 CTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCT 7100235 Query 49119 CCTACGTCTATAAAATAATTATAAGC-AAGCCCTGATCTAGGAGCTATTCTACCGTAGTA 49177 ||||| ||||| || | || ||| ||||| || | ||||||||||| || || | Sbjct 7100234 CCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGT-GGAGCTATTCTTCCATAAAA 7100176 Query 49178 TCCATTAGGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGTTCTAT 49237 || ||| || ||| || || ||||| | | | | ||||||||| || Sbjct 7100175 CTCAGAAGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTCTCCATAGGTGGTAC 7100116 Query 49238 TACATAATCATACGCGCTATATAAGTCATAACC 49270 | |||||||||||| || || | |||||| || Sbjct 7100115 TGTATAATCATACGCACTGTACAGGTCATAGCC 7100083 >seq7 Length=57674156 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 58536 GTCAGGCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATT 58595 |||| |||||||| || || ||||||||||| || |||||||| ||||||| || | Sbjct 6004528 GTCAAGCATTTTTTGGAGCCCAGTTGAATTCCTTCATCCATGTGGTTATGTACTCCTACT 6004469 Query 58596 ATGGTATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTA 58655 |||| | | |||| ||| | | || | |||||| | |||||||| || ||||| | Sbjct 6004468 ATGGGTTAACTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGA 6004409 Query 58656 CTATAATGCAATTGGT 58671 |||| |||| |||| Sbjct 6004408 CTATGTTGCAGCTGGT 6004393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903376339620320