Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq82 84.2 4e-11
seq7 84.2 4e-11
>seq82
Length=9772303
Score = 84.2 bits (92), Expect = 4e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 49059 CTGAAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCA 49118
|| |||||||| | || |||||| || || |||||||| ||| || || ||||||||
Sbjct 7100294 CTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCT 7100235
Query 49119 CCTACGTCTATAAAATAATTATAAGC-AAGCCCTGATCTAGGAGCTATTCTACCGTAGTA 49177
||||| ||||| || | || ||| ||||| || | ||||||||||| || || |
Sbjct 7100234 CCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGT-GGAGCTATTCTTCCATAAAA 7100176
Query 49178 TCCATTAGGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGTTCTAT 49237
|| ||| || ||| || || ||||| | | | | ||||||||| ||
Sbjct 7100175 CTCAGAAGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTCTCCATAGGTGGTAC 7100116
Query 49238 TACATAATCATACGCGCTATATAAGTCATAACC 49270
| |||||||||||| || || | |||||| ||
Sbjct 7100115 TGTATAATCATACGCACTGTACAGGTCATAGCC 7100083
>seq7
Length=57674156
Score = 84.2 bits (92), Expect = 4e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 58536 GTCAGGCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATT 58595
|||| |||||||| || || ||||||||||| || |||||||| ||||||| || |
Sbjct 6004528 GTCAAGCATTTTTTGGAGCCCAGTTGAATTCCTTCATCCATGTGGTTATGTACTCCTACT 6004469
Query 58596 ATGGTATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTA 58655
|||| | | |||| ||| | | || | |||||| | |||||||| || ||||| |
Sbjct 6004468 ATGGGTTAACTGCGTTTGGCCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGA 6004409
Query 58656 CTATAATGCAATTGGT 58671
|||| |||| ||||
Sbjct 6004408 CTATGTTGCAGCTGGT 6004393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903376339620320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |