Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq15 113 6e-20 seq44 105 9e-18 seq1 105 9e-18 seq111 104 3e-17 seq30 104 3e-17 seq162 98.7 1e-15 seq55 86.0 8e-12 >seq15 Length=34426505 Score = 113 bits (124), Expect = 6e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 8633 AAATGTCGGGCTGCCGATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGT 8692 |||| || ||||||| || | |||||||||||||||||||| ||||| |||| |||| Sbjct 116681 AAATCTCAAGCTGCCGTTGTGGTTTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGT 116740 Query 8693 CGCACGGGAGACCGGGGTTCGATTCCCCGACGAGGAG 8729 | | |||||||||||||||||||||||||||| |||| Sbjct 116741 CACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG 116777 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 116706 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 116765 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 116766 CCCGACGGGGAG 116777 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 116777 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 116718 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 116717 TACTAACGAGGA 116706 >seq44 Length=19882732 Score = 105 bits (116), Expect = 9e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11718 TGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACC 11776 ||| || | | |||||||||||||||||||| ||||| |||| ||||| | ||||||||| Sbjct 10264293 TGTATAGCTCGGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACC 10264352 Query 11777 GGGGTTCGATTCCCCGACGAGGAGG 11801 ||||||||||||||||||| ||||| Sbjct 10264353 GGGGTTCGATTCCCCGACGGGGAGG 10264377 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 10264305 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 10264364 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 10264365 CCCGACGGGGAGGAG 10264379 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 10264376 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10264317 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 10264316 TACTAACGAGGA 10264305 >seq1 Length=79733107 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 21446084 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 21446143 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 21446144 CCCCGACGGGGAG 21446156 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 23541279 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 23541338 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 23541339 CCCGACGGGGAG 23541350 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 21446085 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 21446144 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 21446145 CCCGACGGGGAGG 21446157 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 23541279 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 23541338 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 23541339 CCCGACGGGGAGG 23541351 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 21446156 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21446097 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 21446096 TACTAACGAGGA 21446085 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 23541350 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 23541291 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 23541290 TACTAACGAGGAGTT 23541276 >seq111 Length=4240621 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3786514 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3786573 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 3786574 CCCGACGGGGAG 3786585 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3917656 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3917597 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 3917596 CCCGACGGGGAG 3917585 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3917656 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3917597 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 3917596 CCCGACGGGGAGG 3917584 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3786514 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3786573 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 3786574 CCCGACGGGGAG 3786585 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3786585 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3786526 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3786525 TACTAACGAGGA 3786514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| Sbjct 3917582 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 3917641 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 3917642 CTATACTAACGAGGA 3917656 >seq30 Length=26277727 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 20346697 CCTGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 20346638 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 20346637 ATTCCCCGACGGGGAGG 20346621 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 20346693 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20346634 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 20346633 CCCGACGGGGAG 20346622 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 20352821 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 20352762 Query 11788 CCCCGACGAGGAGG 11801 |||||| | ||||| Sbjct 20352761 CCCCGATGGGGAGG 20352748 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 20352820 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20352761 Query 8718 CCCGACGAGGAG 8729 ||||| | |||| Sbjct 20352760 CCCGATGGGGAG 20352749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 20346622 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20346681 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 20346682 TACTAACGAGGA 20346693 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| | ||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 20352749 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20352808 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 20352809 TACTAACGAGGA 20352820 >seq162 Length=873626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 46053 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 46112 Query 8718 CCCGACGAGGAG 8729 ||||| | |||| Sbjct 46113 CCCGATGGGGAG 46124 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 46053 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 46112 Query 11789 CCCGACGAGGAGG 11801 ||||| | ||||| Sbjct 46113 CCCGATGGGGAGG 46125 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| | ||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 46124 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46065 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 46064 TACTAACGAGGAT 46052 >seq55 Length=16538760 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||| ||| ||||| |||| ||||| || || ||||||| |||||||| Sbjct 413460 GTCCTCGTTAGTATAGCGGTGAGTATCCCCGCCTGTCACAAGGAAGACCGGTGTTCGATT 413401 Query 11788 CCCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 413400 CCCCGACAGGGAGG 413387 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||| ||| ||||| |||| ||||| || || ||||||| ||||||||| Sbjct 413459 TCCTCGTTAGTATAGCGGTGAGTATCCCCGCCTGTCACAAGGAAGACCGGTGTTCGATTC 413400 Query 8718 CCCGACGAGGAG 8729 |||||| |||| Sbjct 413399 CCCGACAGGGAG 413388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652819608351280