Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq15 113 6e-20
seq44 105 9e-18
seq1 105 9e-18
seq111 104 3e-17
seq30 104 3e-17
seq162 98.7 1e-15
seq55 86.0 8e-12
>seq15
Length=34426505
Score = 113 bits (124), Expect = 6e-20
Identities = 83/97 (86%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 8633 AAATGTCGGGCTGCCGATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGT 8692
|||| || ||||||| || | |||||||||||||||||||| ||||| |||| ||||
Sbjct 116681 AAATCTCAAGCTGCCGTTGTGGTTTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGT 116740
Query 8693 CGCACGGGAGACCGGGGTTCGATTCCCCGACGAGGAG 8729
| | |||||||||||||||||||||||||||| ||||
Sbjct 116741 CACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG 116777
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 116706 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 116765
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 116766 CCCGACGGGGAG 116777
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 116777 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 116718
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 116717 TACTAACGAGGA 116706
>seq44
Length=19882732
Score = 105 bits (116), Expect = 9e-18
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11718 TGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACC 11776
||| || | | |||||||||||||||||||| ||||| |||| ||||| | |||||||||
Sbjct 10264293 TGTATAGCTCGGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACC 10264352
Query 11777 GGGGTTCGATTCCCCGACGAGGAGG 11801
||||||||||||||||||| |||||
Sbjct 10264353 GGGGTTCGATTCCCCGACGGGGAGG 10264377
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 10264305 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 10264364
Query 8718 CCCGACGAGGAGCAG 8732
||||||| |||| ||
Sbjct 10264365 CCCGACGGGGAGGAG 10264379
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 10264376 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10264317
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 10264316 TACTAACGAGGA 10264305
>seq1
Length=79733107
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 21446084 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 21446143
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 21446144 CCCCGACGGGGAG 21446156
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 23541279 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 23541338
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 23541339 CCCGACGGGGAG 23541350
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 21446085 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 21446144
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 21446145 CCCGACGGGGAGG 21446157
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 23541279 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 23541338
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 23541339 CCCGACGGGGAGG 23541351
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 21446156 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21446097
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 21446096 TACTAACGAGGA 21446085
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 23541350 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 23541291
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 23541290 TACTAACGAGGAGTT 23541276
>seq111
Length=4240621
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 3786514 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3786573
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 3786574 CCCGACGGGGAG 3786585
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 3917656 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3917597
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 3917596 CCCGACGGGGAG 3917585
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 3917656 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3917597
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 3917596 CCCGACGGGGAGG 3917584
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 3786514 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3786573
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 3786574 CCCGACGGGGAG 3786585
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 3786585 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3786526
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 3786525 TACTAACGAGGA 3786514
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409
|| |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||
Sbjct 3917582 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 3917641
Query 139410 CTATACTAACGAGGA 139424
|||||||||||||||
Sbjct 3917642 CTATACTAACGAGGA 3917656
>seq30
Length=26277727
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|| |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 20346697 CCTGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 20346638
Query 11785 ATTCCCCGACGAGGAGG 11801
||||||||||| |||||
Sbjct 20346637 ATTCCCCGACGGGGAGG 20346621
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 20346693 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20346634
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 20346633 CCCGACGGGGAG 20346622
Score = 98.7 bits (108), Expect = 1e-15
Identities = 67/74 (91%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 20352821 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 20352762
Query 11788 CCCCGACGAGGAGG 11801
|||||| | |||||
Sbjct 20352761 CCCCGATGGGGAGG 20352748
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 20352820 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20352761
Query 8718 CCCGACGAGGAG 8729
||||| | ||||
Sbjct 20352760 CCCGATGGGGAG 20352749
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 20346622 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20346681
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 20346682 TACTAACGAGGA 20346693
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| | ||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 20352749 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20352808
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 20352809 TACTAACGAGGA 20352820
>seq162
Length=873626
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 46053 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 46112
Query 8718 CCCGACGAGGAG 8729
||||| | ||||
Sbjct 46113 CCCGATGGGGAG 46124
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 46053 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 46112
Query 11789 CCCGACGAGGAGG 11801
||||| | |||||
Sbjct 46113 CCCGATGGGGAGG 46125
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| | ||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 46124 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46065
Query 139413 TACTAACGAGGAT 139425
|||||||||||||
Sbjct 46064 TACTAACGAGGAT 46052
>seq55
Length=16538760
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||| ||| ||||| |||| ||||| || || ||||||| ||||||||
Sbjct 413460 GTCCTCGTTAGTATAGCGGTGAGTATCCCCGCCTGTCACAAGGAAGACCGGTGTTCGATT 413401
Query 11788 CCCCGACGAGGAGG 11801
||||||| |||||
Sbjct 413400 CCCCGACAGGGAGG 413387
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||| ||| ||||| |||| ||||| || || ||||||| |||||||||
Sbjct 413459 TCCTCGTTAGTATAGCGGTGAGTATCCCCGCCTGTCACAAGGAAGACCGGTGTTCGATTC 413400
Query 8718 CCCGACGAGGAG 8729
|||||| ||||
Sbjct 413399 CCCGACAGGGAG 413388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652819608351280
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