Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq44 104 2e-17 >seq25 Length=29395486 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | ||||||| ||||||||| |||||||||||||| || Sbjct 9574117 TCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 9574176 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| || | | ||| | || || |||| ||||| || | ||||| | Sbjct 9574177 TCCTGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATG 9574236 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || ||||| || ||||| Sbjct 9574237 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 9574271 >seq44 Length=19882732 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||| | || | ||| |||||| ||||| ||||| Sbjct 2427281 GGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCCTCCAGCTGTTTGCC 2427340 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| || | || | ||||||||| || |||||||| |||| ||| ||| ||| || | Sbjct 2427341 CGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCTTGGAT-TTTAGCTT 2427399 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||| |||||| || | || ||||| ||| ||||| |||| | Sbjct 2427400 TGACATTCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGGTCTTGCCCATCAGGG 2427459 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || ||||| || Sbjct 2427460 TCTTCACAAAGATCTGTAT 2427478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402145999880