Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq82 298 6e-76
seq61 206 3e-48
>seq82
Length=9772303
Score = 298 bits (330), Expect = 6e-76
Identities = 632/940 (67%), Gaps = 15/940 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 5823581 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCA 5823640
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||||||| ||| | | || |||| || | || || |
Sbjct 5823641 TGTCAAACTTATTGGCAAACAGGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCACCTG 5823697
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| || ||||||||||| |||||||| || |||||||| || || || |||| || |
Sbjct 5823698 CTCCAAAAACGCACACGGAGCGCACGTGGACCCCGCTGCAGGGGGGGTAGGGGGCGCCCT 5823757
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| |||||||| || ||||||| || || |||||||| |
Sbjct 5823758 TGGAAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAG 5823817
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||| ||||| || | | | || | || || || | || | ||||| ||||
Sbjct 5823818 ACATGTCATACTTATAGCTTAAGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAAGAG 5823877
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || ||||| || ||||| || || | ||||||||| |||| ||
Sbjct 5823878 TGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTTGGCCCACTCCATAAACTTTTGGA 5823937
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | ||| | || || || ||| | || | ||| || || || |
Sbjct 5823938 TTTTTTCATTCTCTAGCACATACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 5823997
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | ||||||| || |||||| || ||||| | |
Sbjct 5823998 CCGAAAACAGAGGTGTTTCAAGAGGAGGGTGCATTTTGTCAGTCCCTGTGTTTGTCAGCT 5824057
Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594
|||| | ||||| ||| | ||| ||||||| | | ||| ||| | |
Sbjct 5824058 TTCCATTAACGAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 5824113
Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654
|| || ||||| |||| ||| || | ||| |||| | || || || ||
Sbjct 5824114 CTCTCAGTTTCTAGGTTGTTTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGG 5824173
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
||||| |||| |||||| || | ||||| ||||| || | || ||||| | | ||
Sbjct 5824174 TTGGTTTTAATGGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTC 5824233
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| | ||| || ||||| | ||||| || || ||||| || |||||||| || ||||||
Sbjct 5824234 ATGCTGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCGTAC 5824293
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| || ||||||| | | |||| |||||||| || |||||| || | || || |||
Sbjct 5824294 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCAATC 5824353
Query 162835 ACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892
|| ||| | || ||| || | ||| | || ||||| | |||||| | |||||
Sbjct 5824354 ACCGCCGCCAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAGTAGAAATTCT 5824411
Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952
|||| |||||||||||||| | || || | ||| || || || || || ||||| |
Sbjct 5824412 GAGGCATATAGATGGCCCTCAGGAGCCTATCAAGCATTTCAATTTTGTGATGAACCACTA 5824471
Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992
||||||||||||| || ||||| ||||| || ||||||
Sbjct 5824472 TAGAATACGCTATTGGAAACTCCGCCTCTTCTTTACTGAG 5824511
>seq61
Length=14532071
Score = 206 bits (228), Expect = 3e-48
Identities = 239/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| || || || || ||||| ||||| |||||||| | |
Sbjct 8636800 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCGGAACCAAAGGTATTAAAGAGGC 8636859
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
| | |||| || || ||||||| |||||| ||||| || || | || || || ||
Sbjct 8636860 AATTGTAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGA 8636919
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | |||||| || | ||||||||| ||||| || || |
Sbjct 8636920 GTCCTAGCTGAGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 8636979
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| ||| |||||||||| || ||| |||||| || |||||||| || || |
Sbjct 8636980 TCTTGCTGAAGGTGACCATGTTTTCTGGACTCACAGCCTTGATTTTCTGCCATGTCACAA 8637039
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||||| | | ||||| || ||||||||||| |||||||||||||||| | |
Sbjct 8637040 TCAAGACTTCCTGGGAAGTTTGCAGGGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 8637099
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||||| ||||| || || ||
Sbjct 8637100 CTCTTTCATCTTGGGTCACGAC 8637121
Score = 100 bits (110), Expect = 3e-16
Identities = 174/251 (69%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| |||| | || ||| | |||| ||| || | ||| ||||||||||
Sbjct 8634227 ACAGTTTGCCTGAAGCTGGTCACATTTCCCAGGTGCCGCACATGGCAGATCACCTCCT-- 8634284
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || || ||||| || || || | ||| || ||||| || |||||
Sbjct 8634285 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGACGCTGGTGACAGACGTGGTCCCA 8634343
Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
|| | ||| |||| | | |||||| || || || | || || | | |||||
Sbjct 8634344 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCGATCTCTGACCCAGAGATCTTCCAG 8634400
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739
|| || |||| ||||| | ||| | ||||||||||| || |||| ||||| |||
Sbjct 8634401 AAGATCTCAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAG 8634460
Query 171740 AACTCATAGTG 171750
|| | ||||||
Sbjct 8634461 AATTTATAGTG 8634471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578409679755200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |