Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq82 298 6e-76 seq61 206 3e-48 >seq82 Length=9772303 Score = 298 bits (330), Expect = 6e-76 Identities = 632/940 (67%), Gaps = 15/940 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 5823581 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCA 5823640 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||||||| ||| | | || |||| || | || || | Sbjct 5823641 TGTCAAACTTATTGGCAAACAGGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCACCTG 5823697 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || ||||||||||| |||||||| || |||||||| || || || |||| || | Sbjct 5823698 CTCCAAAAACGCACACGGAGCGCACGTGGACCCCGCTGCAGGGGGGGTAGGGGGCGCCCT 5823757 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| |||||||| || ||||||| || || |||||||| | Sbjct 5823758 TGGAAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAG 5823817 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| || | | | || | || || || | || | ||||| |||| Sbjct 5823818 ACATGTCATACTTATAGCTTAAGGACAGTGAGCCTGGGACTTCAGGGATCCTCTGAAGAG 5823877 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || ||||| || || | ||||||||| |||| || Sbjct 5823878 TGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTTGGCCCACTCCATAAACTTTTGGA 5823937 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | || || || ||| | || | ||| || || || | Sbjct 5823938 TTTTTTCATTCTCTAGCACATACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 5823997 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||||||| || |||||| || ||||| | | Sbjct 5823998 CCGAAAACAGAGGTGTTTCAAGAGGAGGGTGCATTTTGTCAGTCCCTGTGTTTGTCAGCT 5824057 Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 |||| | ||||| ||| | ||| ||||||| | | ||| ||| | | Sbjct 5824058 TTCCATTAACGAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 5824113 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| ||| || | ||| |||| | || || || || Sbjct 5824114 CTCTCAGTTTCTAGGTTGTTTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGG 5824173 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| |||||| || | ||||| ||||| || | || ||||| | | || Sbjct 5824174 TTGGTTTTAATGGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTC 5824233 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| || ||||| | ||||| || || ||||| || |||||||| || |||||| Sbjct 5824234 ATGCTGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCGTAC 5824293 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| |||||||| || |||||| || | || || ||| Sbjct 5824294 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAACAGGAGGCAATGCCAATC 5824353 Query 162835 ACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 || ||| | || ||| || | ||| | || ||||| | |||||| | ||||| Sbjct 5824354 ACCGCCGCCAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAGTAGAAATTCT 5824411 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 5824412 GAGGCATATAGATGGCCCTCAGGAGCCTATCAAGCATTTCAATTTTGTGATGAACCACTA 5824471 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 ||||||||||||| || ||||| ||||| || |||||| Sbjct 5824472 TAGAATACGCTATTGGAAACTCCGCCTCTTCTTTACTGAG 5824511 >seq61 Length=14532071 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || ||||| ||||| |||||||| | | Sbjct 8636800 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCGGAACCAAAGGTATTAAAGAGGC 8636859 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 | | |||| || || ||||||| |||||| ||||| || || | || || || || Sbjct 8636860 AATTGTAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGA 8636919 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 8636920 GTCCTAGCTGAGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 8636979 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| || ||| |||||| || |||||||| || || | Sbjct 8636980 TCTTGCTGAAGGTGACCATGTTTTCTGGACTCACAGCCTTGATTTTCTGCCATGTCACAA 8637039 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | ||||| || ||||||||||| |||||||||||||||| | | Sbjct 8637040 TCAAGACTTCCTGGGAAGTTTGCAGGGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 8637099 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || || || Sbjct 8637100 CTCTTTCATCTTGGGTCACGAC 8637121 Score = 100 bits (110), Expect = 3e-16 Identities = 174/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| | || ||| | |||| ||| || | ||| |||||||||| Sbjct 8634227 ACAGTTTGCCTGAAGCTGGTCACATTTCCCAGGTGCCGCACATGGCAGATCACCTCCT-- 8634284 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || | ||| || ||||| || ||||| Sbjct 8634285 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGACGCTGGTGACAGACGTGGTCCCA 8634343 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || | || || | | ||||| Sbjct 8634344 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCGATCTCTGACCCAGAGATCTTCCAG 8634400 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 || || |||| ||||| | ||| | ||||||||||| || |||| ||||| ||| Sbjct 8634401 AAGATCTCAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAG 8634460 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 8634461 AATTTATAGTG 8634471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409679755200