Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14 107 5e-18 >seq14 Length=35217250 Score = 107 bits (118), Expect = 5e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||| || || ||||| || ||| || | || || ||| || || | | | ||| Sbjct 7097813 AAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTCGGATATAATAGAAAGT 7097754 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 | |||| ||||| || | || ||||||||| | || |||||||| ||||| Sbjct 7097753 GCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCAGCAAAGACTGATCTTT 7097694 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 7097693 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 7097634 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 |||||||| ||||| ||||||||| Sbjct 7097633 ACTCTTCATCTTGTGTTGAGACTT 7097610 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| | Sbjct 7097610 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 7097669 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 7097670 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 7097712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181774056402127