Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq23 113 1e-21
seq111 105 2e-19
seq69 105 2e-19
seq30 102 3e-18
seq106 100 9e-18
seq10 100 9e-18
>seq23
Length=29576853
Score = 113 bits (124), Expect = 1e-21
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 13728708 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 13728649
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 13728648 CCGGGTTTCAGC 13728637
>seq111
Length=4240621
Score = 105 bits (116), Expect = 2e-19
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2309815 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2309756
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 2309755 CCCGGGTTTCGGC 2309743
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2221611 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 2221670
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2221671 CCGGGTTTCGGC 2221682
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2268864 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 2268923
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2268924 CCGGGTTTCGGC 2268935
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 3714921 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 3714862
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3714861 CCGGGTTTCGGC 3714850
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2362346 GGCCGAAATAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 2362405
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 2362406 CCCGGGTTTCGGC 2362418
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2070163 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2070222
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2070223 CCGGGTTTCGGC 2070234
Score = 95.1 bits (104), Expect = 4e-16
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 2282831 GAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTGCCTGGTTCAATCCTG 2282772
Query 2832 GG 2833
||
Sbjct 2282771 GG 2282770
>seq69
Length=12347721
Score = 105 bits (116), Expect = 2e-19
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 4000956 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 4000897
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 4000896 CCGGGTTT 4000889
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3995356 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3995297
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3995296 CCGGGTTTCGGC 3995285
>seq30
Length=26277727
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 20347237 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 20347178
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 20347177 TCCCGGGTTTCGGC 20347164
>seq106
Length=5365863
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 4545546 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 4545605
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 4545606 CCCGGGTTTCGGC 4545618
>seq10
Length=44174171
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 27453965 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 27453906
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 27453905 CCCGGGTTTCGGC 27453893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15849064853115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |