Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq61 338 7e-88
seq15 178 2e-39
seq5 174 2e-38
seq3 172 6e-38
seq8 136 5e-27
>seq61
Length=14532071
Score = 338 bits (374), Expect = 7e-88
Identities = 267/320 (83%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|| |||||||| ||||| || | |||||||||||| || || ||| | | ||||||||||
Sbjct 8637121 GTCGTGACCCAAGATGAAAGAGAGCTGCTGAACACACCTGCTTCCTTAAGATGCTCCCTG 8637062
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| ||||| ||||| || ||||||| || ||||||||||||||| | | ||||||
Sbjct 8637061 CAAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTGAGTCCAGAA 8637002
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| |||| ||||| ||||||||||| || ||||||||||||
Sbjct 8637001 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAAG 8636942
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||| ||||| |||||||| ||||||||||| || || |||||||||||| |
Sbjct 8636941 ATAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 8636882
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||
Sbjct 8636881 GAGGATGAGGGGTGTTACAATTGCCTCTTTAATACCTTTGGTTCCGGGAAGATCTCAGGA 8636822
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
|| |||||||||||||||||
Sbjct 8636821 GTAGCCTGCCTCACCCTCTC 8636802
Score = 266 bits (294), Expect = 4e-66
Identities = 228/282 (81%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| || || || || |||||||| ||||| |||||||| || ||||
Sbjct 8634497 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTCTTTGAAGACCACCTAAATATCA 8634438
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || ||||||||||||||||| | ||| |||| || |||||||| || |||||||| |
Sbjct 8634437 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGAGATCTTCTGGAAGATCTCTGGGTCAGAGA 8634378
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
| || ||||||| ||| |||| || || | ||||| || || ||||| ||||| || |
Sbjct 8634377 TCGAGAACAGTACTGAGATTCTCTCACACCCCAATGGGACCACGTCTGTCACCAGCGTCC 8634318
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| || |||||||||||||||||| |||| |||||||| |||||||| ||| ||||||
Sbjct 8634317 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCATGTGCGGCACC 8634258
Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
|||||||||| || | ||| ||| ||||||| | ||| ||||
Sbjct 8634257 TGGGAAATGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 8634216
>seq15
Length=34426505
Score = 178 bits (196), Expect = 2e-39
Identities = 138/167 (83%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||||||
Sbjct 31359036 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 31359095
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| ||| ||||| ||||| |||||||| || ||||
Sbjct 31359096 TGCCCCAGGCTGAGAACCAC------------GGCCCAGACATCAAGGAGCACGTGAACT 31359143
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
|||||||||||||||| |||||||| || |||||||||||| ||||
Sbjct 31359144 CTCTGGGGGAAAAGCTGAAGACCCTGAGGCTGAGGCTGCGGCAATGT 31359190
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232
|||||||||||| ||||||||||||||||||| || |||||| ||||||| |||||||||
Sbjct 31358722 CAAATGAAGGACGAGCTGGACAACATGTTGTTGAACGGGTCCTTGCTGGAGGACTTTAAG 31358781
Query 178233 G 178233
|
Sbjct 31358782 G 31358782
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| |||| || ||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 31361375 AGCTCCAAGGGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 31361434
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
||||||| || ||||| | || ||||
Sbjct 31361435 TAGAAGCCTATATGACGATGAAGATGA 31361461
>seq5
Length=63188916
Score = 174 bits (192), Expect = 2e-38
Identities = 138/166 (83%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 52112091 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 52112150
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 52112151 GGGCACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 52112210
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147
||||||| |||||||| || |||||||| || || ||||||
Sbjct 52112211 CACCACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATG 52112256
>seq3
Length=68426573
Score = 172 bits (190), Expect = 6e-38
Identities = 541/830 (65%), Gaps = 41/830 (5%)
Strand=Plus/Plus
Query 8615 CTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGT 8674
||||||||||| || |||| || | |||||| ||||| | | |||||| || |
Sbjct 44832593 CTCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAAT 44832652
Query 8675 ACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGC 8734
||||||||||| |||| ||||||||||||| |||| |||| |||| || |||| |||
Sbjct 44832653 ACAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGC 44832712
Query 8735 TGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGGTGGG 8794
| | | ||||| || || || |||||||||| || || |||| || |||||
Sbjct 44832713 TCTTTCTATTCACTCTGCCATTCTGGATTCACT--ATGTCAGGTGGAA----TGAGTGGG 44832766
Query 8795 ACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTACAGCG 8854
| |||| |||||||||||| | || | |||| || || ||||||| |
Sbjct 44832767 TTTTTGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTG 44832826
Query 8855 AAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCGGTGG 8914
| || | || ||||||||| |||| | ||| ||||||| || | || |||| |||
Sbjct 44832827 AGATCTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGT 44832886
Query 8915 CTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGGATTC 8974
| | | | ||| || | | ||| || | |||| ||||| ||||| | |
Sbjct 44832887 TTGCCCTTCGAGCCCGGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCC 44832946
Query 8975 TGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCACAGGCA 9034
|||| | | | | | || | || ||||||||||| ||| || | | ||
Sbjct 44832947 TGGCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGGAC 44833006
Query 9035 AGGGGGTCTGCCAAGCCTCCTACACAGACTTT------------TGGAAGGGGGTTGATG 9082
|| |||||| | || ||| |||| | ||||| | || |||
Sbjct 44833007 AGTACATCTGCCTTCCTTCTTACCCAGAAAATGAAGAAGATACCTGGAAACGTTTTCATG 44833066
Query 9083 TTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTGC 9138
|| || |||| || |||| | || |||||| ||||| | ||||| |||||
Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCT----CTGCCTCTGCTTGTAATGGCTGTCTGC 44833122
Query 9139 TACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-ACG 9196
|||| |||||| || | || | | |||| || || | ||| | | | |
Sbjct 44833123 TACTCAGGAATCATTAAAACATTGCTGAGATGCCC-CA----GTAAAAAAAAGTACAAGG 44833177
Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256
|| | ||||||||| |||| ||||| | | ||| | || ||| || ||||||
Sbjct 44833178 CCATACGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACC 44833237
Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGCGG 9315
| | || || | ||| | ||| || | | |||| | |||| ||||||| |||
Sbjct 44833238 TGGTTATCCTTATCTCCACTTTTCAAACGGTCTTCTTTGAGACCAG-CTGTGAA---CGG 44833293
Query 9316 CGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372
||| | ||||||||||||| ||||| | ||| |||| |||| || |||||||||
Sbjct 44833294 AGCAAACAGCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGC 44833353
Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422
|||||||| || |||||||| ||||| ||||| | |||||| || ||||
Sbjct 44833354 GTCAACCCGGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAGCACCT 44833403
Score = 131 bits (144), Expect = 2e-25
Identities = 126/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||| ||| | |||| || | ||||| ||||||| |||| ||||||||
Sbjct 44790505 GTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 44790446
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| |||||||||||||| | |||||||| ||||| ||| ||||||||||| || |||
Sbjct 44790445 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCGTTTCTGA 44790386
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA 8771
|||||| | | ||||| || ||||| |||||| ||| |||
Sbjct 44790385 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTACCA 44790344
>seq8
Length=46046909
Score = 136 bits (150), Expect = 5e-27
Identities = 201/283 (71%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831
|||||| |||| |||| || | ||||| || | ||| || || || ||| |
Sbjct 12968394 CTAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGAC 12968453
Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891
||| ||| |||| || || || | ||| || | | || |||||||| ||||| ||
Sbjct 12968454 TTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 12968513
Query 146892 TCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 146949
| || | || || | ||| |||||||| || || ||||| || ||||| | ||
Sbjct 12968514 CCTCGGTT--CTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGT 12968571
Query 146950 GCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATG 147009
|| || |||| || || |||||||| || ||||| |||||||| | ||| || | ||||
Sbjct 12968572 GCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATG 12968631
Query 147010 TAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCA 147052
||||||||||| | ||||||||| ||||||| ||| || ||||
Sbjct 12968632 TAGGTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACCCA 12968674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583465484656800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |