Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq61 338 7e-88 seq15 178 2e-39 seq5 174 2e-38 seq3 172 6e-38 seq8 136 5e-27 >seq61 Length=14532071 Score = 338 bits (374), Expect = 7e-88 Identities = 267/320 (83%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 || |||||||| ||||| || | |||||||||||| || || ||| | | |||||||||| Sbjct 8637121 GTCGTGACCCAAGATGAAAGAGAGCTGCTGAACACACCTGCTTCCTTAAGATGCTCCCTG 8637062 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| || ||||||| || ||||||||||||||| | | |||||| Sbjct 8637061 CAAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTGAGTCCAGAA 8637002 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||||||||||| || |||||||||||| Sbjct 8637001 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAAG 8636942 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| ||||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 8636941 ATAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 8636882 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| || Sbjct 8636881 GAGGATGAGGGGTGTTACAATTGCCTCTTTAATACCTTTGGTTCCGGGAAGATCTCAGGA 8636822 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || ||||||||||||||||| Sbjct 8636821 GTAGCCTGCCTCACCCTCTC 8636802 Score = 266 bits (294), Expect = 4e-66 Identities = 228/282 (81%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||| ||||| |||||||| || |||| Sbjct 8634497 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTCTTTGAAGACCACCTAAATATCA 8634438 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| |||| || |||||||| || |||||||| | Sbjct 8634437 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGAGATCTTCTGGAAGATCTCTGGGTCAGAGA 8634378 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 | || ||||||| ||| |||| || || | ||||| || || ||||| ||||| || | Sbjct 8634377 TCGAGAACAGTACTGAGATTCTCTCACACCCCAATGGGACCACGTCTGTCACCAGCGTCC 8634318 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| |||||| Sbjct 8634317 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCATGTGCGGCACC 8634258 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||||||||| || | ||| ||| ||||||| | ||| |||| Sbjct 8634257 TGGGAAATGTGACCAGCTTCAGGCAAACTGTGAACAAAGGTA 8634216 >seq15 Length=34426505 Score = 178 bits (196), Expect = 2e-39 Identities = 138/167 (83%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 31359036 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 31359095 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || |||| Sbjct 31359096 TGCCCCAGGCTGAGAACCAC------------GGCCCAGACATCAAGGAGCACGTGAACT 31359143 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||||||||||||||| |||||||| || |||||||||||| |||| Sbjct 31359144 CTCTGGGGGAAAAGCTGAAGACCCTGAGGCTGAGGCTGCGGCAATGT 31359190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||| ||||||||||||||||||| || |||||| ||||||| ||||||||| Sbjct 31358722 CAAATGAAGGACGAGCTGGACAACATGTTGTTGAACGGGTCCTTGCTGGAGGACTTTAAG 31358781 Query 178233 G 178233 | Sbjct 31358782 G 31358782 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| |||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 31361375 AGCTCCAAGGGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 31361434 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| || ||||| | || |||| Sbjct 31361435 TAGAAGCCTATATGACGATGAAGATGA 31361461 >seq5 Length=63188916 Score = 174 bits (192), Expect = 2e-38 Identities = 138/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 52112091 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 52112150 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||||||||||||||||||| || ||||| |||| Sbjct 52112151 GGGCACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 52112210 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| || |||||||| || || |||||| Sbjct 52112211 CACCACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATG 52112256 >seq3 Length=68426573 Score = 172 bits (190), Expect = 6e-38 Identities = 541/830 (65%), Gaps = 41/830 (5%) Strand=Plus/Plus Query 8615 CTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATAAAGT 8674 ||||||||||| || |||| || | |||||| ||||| | | |||||| || | Sbjct 44832593 CTCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAAT 44832652 Query 8675 ACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGACCTGC 8734 ||||||||||| |||| ||||||||||||| |||| |||| |||| || |||| ||| Sbjct 44832653 ACAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGC 44832712 Query 8735 TGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGGTGGG 8794 | | | ||||| || || || |||||||||| || || |||| || ||||| Sbjct 44832713 TCTTTCTATTCACTCTGCCATTCTGGATTCACT--ATGTCAGGTGGAA----TGAGTGGG 44832766 Query 8795 ACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTACAGCG 8854 | |||| |||||||||||| | || | |||| || || ||||||| | Sbjct 44832767 TTTTTGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTG 44832826 Query 8855 AAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCGGTGG 8914 | || | || ||||||||| |||| | ||| ||||||| || | || |||| ||| Sbjct 44832827 AGATCTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGT 44832886 Query 8915 CTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTGGATTC 8974 | | | | ||| || | | ||| || | |||| ||||| ||||| | | Sbjct 44832887 TTGCCCTTCGAGCCCGGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCC 44832946 Query 8975 TGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCACAGGCA 9034 |||| | | | | | || | || ||||||||||| ||| || | | || Sbjct 44832947 TGGCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGGAC 44833006 Query 9035 AGGGGGTCTGCCAAGCCTCCTACACAGACTTT------------TGGAAGGGGGTTGATG 9082 || |||||| | || ||| |||| | ||||| | || ||| Sbjct 44833007 AGTACATCTGCCTTCCTTCTTACCCAGAAAATGAAGAAGATACCTGGAAACGTTTTCATG 44833066 Query 9083 TTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTGC 9138 || || |||| || |||| | || |||||| ||||| | ||||| ||||| Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCT----CTGCCTCTGCTTGTAATGGCTGTCTGC 44833122 Query 9139 TACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-ACG 9196 |||| |||||| || | || | | |||| || || | ||| | | | | Sbjct 44833123 TACTCAGGAATCATTAAAACATTGCTGAGATGCCC-CA----GTAAAAAAAAGTACAAGG 44833177 Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256 || | ||||||||| |||| ||||| | | ||| | || ||| || |||||| Sbjct 44833178 CCATACGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACC 44833237 Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGCGG 9315 | | || || | ||| | ||| || | | |||| | |||| ||||||| ||| Sbjct 44833238 TGGTTATCCTTATCTCCACTTTTCAAACGGTCTTCTTTGAGACCAG-CTGTGAA---CGG 44833293 Query 9316 CGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372 ||| | ||||||||||||| ||||| | ||| |||| |||| || ||||||||| Sbjct 44833294 AGCAAACAGCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGC 44833353 Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||| || |||||||| ||||| ||||| | |||||| || |||| Sbjct 44833354 GTCAACCCGGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAGCACCT 44833403 Score = 131 bits (144), Expect = 2e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 44790505 GTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 44790446 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 44790445 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCGTTTCTGA 44790386 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA 8771 |||||| | | ||||| || ||||| |||||| ||| ||| Sbjct 44790385 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTACCA 44790344 >seq8 Length=46046909 Score = 136 bits (150), Expect = 5e-27 Identities = 201/283 (71%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 |||||| |||| |||| || | ||||| || | ||| || || || ||| | Sbjct 12968394 CTAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGAC 12968453 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891 ||| ||| |||| || || || | ||| || | | || |||||||| ||||| || Sbjct 12968454 TTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 12968513 Query 146892 TCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 146949 | || | || || | ||| |||||||| || || ||||| || ||||| | || Sbjct 12968514 CCTCGGTT--CTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGT 12968571 Query 146950 GCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATG 147009 || || |||| || || |||||||| || ||||| |||||||| | ||| || | |||| Sbjct 12968572 GCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATG 12968631 Query 147010 TAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCA 147052 ||||||||||| | ||||||||| ||||||| ||| || |||| Sbjct 12968632 TAGGTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACCCA 12968674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583465484656800