Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 9e-12 >seq15 Length=34426505 Score = 86.0 bits (94), Expect = 9e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 214601 AGGGAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACT 214660 || ||| || || |||| ||| |||| || |||||||||| ||||| ||| | || || Sbjct 13021691 AGAGAAAGAAATGGCTGCGGAGTTGGAAGCACTCTACGGTGACATCGATGCCATGGAGCT 13021750 Query 214661 CTACGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCT 214720 || ||| | | || | ||||| || |||| ||||||||| | || || | | | Sbjct 13021751 GTATCCTGCTCTTCTGGTAGAAAAGCCTCGTCCAGATGCCATCTTTGGGGAGACCATGGT 13021810 Query 214721 CGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGG 214780 || ||| || || || ||| ||| |||||| || || || || ||||| | Sbjct 13021811 AGAACTGGGAGCACCATTTTCCTTGAAAGGACTCATGGGTAATCCTATATGTTCCCCTGA 13021870 Query 214781 CTACTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGAC 214840 ||||||||| | | ||| | ||| | | |||| || ||| | | | || | Sbjct 13021871 CTACTGGAAGCCTAGCACTTTTGGTGGGGAAGTAGGTTTTAAGATCATCAACACTGCCTC 13021930 Query 214841 CCTTCAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTT 214882 |||||||||||||||| | ||||| || || ||||| || Sbjct 13021931 AATTCAGTCTCTCATCTGCAATAACGTGAAAGGCTGTCCTTT 13021972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723312888086880