Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-27 seq48 127 3e-24 seq60 123 3e-23 seq35 116 5e-21 seq82 96.9 5e-15 >seq6 Length=61284144 Score = 138 bits (152), Expect = 2e-27 Identities = 498/769 (65%), Gaps = 24/769 (3%) Strand=Plus/Minus Query 39426 TAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTT 39485 |||| || | ||||| || ||||| ||||| |||||||| |||| ||| | ||||| Sbjct 57314828 TAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTTGCCTCATTA 57314772 Query 39486 CA---CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGA 39542 | ||||||||||| || | | | ||| |||| ||||| ||||||| ||| | Sbjct 57314771 AAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTA 57314713 Query 39543 TGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAAT 39602 | | | | | | ||||| | ||||| | || ||| | ||| || | Sbjct 57314712 TCTTAATAACACCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTGTACAAGAAGT 57314653 Query 39603 GTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 |||||| |||| |||||| |||||||| |||| || ||| |||| | | |||||| | Sbjct 57314652 ATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCTAGTAATTCAT 57314595 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | |||||||||| |||| || || | || ||||| | ||| ||||||| Sbjct 57314594 TGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCTAGTGCAAAAG 57314535 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782 |||| | |||| | || ||||| |||| || || | ||||| ||| | | Sbjct 57314534 CGCCAGT---GGAGATTTCCTCCACTGCCCCAAAGGCTACCACCTGTTCTCCATAAATAG 57314478 Query 39783 TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 || | ||| | | | || ||||| |||||||||||| ||||| |||| Sbjct 57314477 CTTCTTG-----TCCCCAACCAGGTCCTGTCAGC---CTTCTTTACACAGGGCATAGTTT 57314426 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | |||||| |||||| | | || | | ||||||| || || || || | | Sbjct 57314425 CAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTA--ATGCGTGTCAATAAGGA 57314368 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 |||| || ||||| ||||| | ||| || | | || || || || | |||| | ||| Sbjct 57314367 GACTCTATATTTCAGAATGCAAGTTGTCTGT-GTCACCTTGAAGCCACAGAAACGTGTTG 57314309 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| ||||| ||||| | || || ||||| | | || |||||| | ||||| Sbjct 57314308 CTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATATCCAGCTCCAT 57314249 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| | |||| || ||| | ||| ||||||| | | || | || || | Sbjct 57314248 CACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCACAGGCTTC-AGG 57314190 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 ||||||| | | || || || | |||||| || || ||||| ||| || |||| Sbjct 57314189 GCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTCAAAGGAAGCCT 57314130 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 | || || | |||||| | ||| || || | |||| | |||||||| Sbjct 57314129 CAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081 >seq48 Length=18573065 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||||||||| || |||||||| ||||| | || Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2886354 TTTCTTACACCAT 2886366 Score = 100 bits (110), Expect = 4e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||||||||| | || ||||| ||||| ||||| || | | || | |||||| Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432 Query 70110 CATATGCTGAGGTCGTTCTACC 70131 ||||||||| |||| |||| || Sbjct 2903433 CATATGCTGTGGTCTTTCTGCC 2903454 >seq60 Length=14545593 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || ||||| ||||| || ||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || |||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 >seq35 Length=24201928 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| |||||||| |||||||||||||| ||||| | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 13540862 Query 39761 AC 39762 || Sbjct 13540863 AC 13540864 Score = 95.1 bits (104), Expect = 2e-14 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || || | Sbjct 13547385 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 | || |||||||| || ||||| | ||| | || ||||||| | || ||| |||| Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501 Query 40107 ATA 40109 ||| Sbjct 13547502 ATA 13547504 >seq82 Length=9772303 Score = 96.9 bits (106), Expect = 5e-15 Identities = 192/278 (69%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 37427 GTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCAT 37486 ||| | | || ||| | || |||| | |||| | || | |||||| || ||| | | Sbjct 7100350 GTTCACAAATGAGCCGTGCAATTCGACTGCCCTTTTTGACTTTAAATTTTTCTTTGCTAA 7100291 Query 37487 TATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTA 37546 ||| | ||| || || |||| ||| || |||||||||||||| || || || |||||| Sbjct 7100290 AATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTA 7100231 Query 37547 CATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACAAAATT 37603 |||| || |||| || ||| || || ||||||||||||||||| ||| | Sbjct 7100230 CATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCTATTCTTCCATA--AAACTC 7100173 Query 37604 TG--GGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCTCC--AGGAAGGATG 37659 | || |||| ||| |||| || ||||| | ||| | || ||||| ||| | | Sbjct 7100172 AGAAGGAATAGCTATCTGAATGTCGGTTTTCA-CAA-GGGCTGTCTCCATAGGTGGTACT 7100115 Query 37660 GTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 |||||||| ||||| || || | ||||| || | ||| Sbjct 7100114 GTATAATCATACGCACTGTACAGGTCATAGCCTGTGGC 7100077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882293906680