Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 2e-27
seq48 127 3e-24
seq60 123 3e-23
seq35 116 5e-21
seq82 96.9 5e-15
>seq6
Length=61284144
Score = 138 bits (152), Expect = 2e-27
Identities = 498/769 (65%), Gaps = 24/769 (3%)
Strand=Plus/Minus
Query 39426 TAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTT 39485
|||| || | ||||| || ||||| ||||| |||||||| |||| ||| | |||||
Sbjct 57314828 TAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTTGCCTCATTA 57314772
Query 39486 CA---CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGA 39542
| ||||||||||| || | | | ||| |||| ||||| ||||||| ||| |
Sbjct 57314771 AAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTA 57314713
Query 39543 TGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAAT 39602
| | | | | | ||||| | ||||| | || ||| | ||| || |
Sbjct 57314712 TCTTAATAACACCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTGTACAAGAAGT 57314653
Query 39603 GTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662
|||||| |||| |||||| |||||||| |||| || ||| |||| | | |||||| |
Sbjct 57314652 ATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCTAGTAATTCAT 57314595
Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
| |||||||||| |||| || || | || ||||| | ||| |||||||
Sbjct 57314594 TGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCTAGTGCAAAAG 57314535
Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782
|||| | |||| | || ||||| |||| || || | ||||| ||| | |
Sbjct 57314534 CGCCAGT---GGAGATTTCCTCCACTGCCCCAAAGGCTACCACCTGTTCTCCATAAATAG 57314478
Query 39783 TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842
|| | ||| | | | || ||||| |||||||||||| ||||| ||||
Sbjct 57314477 CTTCTTG-----TCCCCAACCAGGTCCTGTCAGC---CTTCTTTACACAGGGCATAGTTT 57314426
Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902
| |||||| |||||| | | || | | ||||||| || || || || | |
Sbjct 57314425 CAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTA--ATGCGTGTCAATAAGGA 57314368
Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962
|||| || ||||| ||||| | ||| || | | || || || || | |||| | |||
Sbjct 57314367 GACTCTATATTTCAGAATGCAAGTTGTCTGT-GTCACCTTGAAGCCACAGAAACGTGTTG 57314309
Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022
|||| ||||| ||||| | || || ||||| | | || |||||| | |||||
Sbjct 57314308 CTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATATCCAGCTCCAT 57314249
Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082
|||| | |||| || ||| | ||| ||||||| | | || | || || |
Sbjct 57314248 CACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCACAGGCTTC-AGG 57314190
Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142
||||||| | | || || || | |||||| || || ||||| ||| || ||||
Sbjct 57314189 GCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTCAAAGGAAGCCT 57314130
Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191
| || || | |||||| | ||| || || | |||| | ||||||||
Sbjct 57314129 CAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081
>seq48
Length=18573065
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||||||||| || |||||||| ||||| | ||
Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 2886354 TTTCTTACACCAT 2886366
Score = 100 bits (110), Expect = 4e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| || || || ||||| || |||||||| || |||
Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373
Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||||||||||| | || ||||| ||||| ||||| || | | || | ||||||
Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432
Query 70110 CATATGCTGAGGTCGTTCTACC 70131
||||||||| |||| |||| ||
Sbjct 2903433 CATATGCTGTGGTCTTTCTGCC 2903454
>seq60
Length=14545593
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | || || ||||| ||||| || ||||| || || || || |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| |
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 39759 CAACAAGTCTCTCTCC 39774
| |||| || ||||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
>seq35
Length=24201928
Score = 116 bits (128), Expect = 5e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| |||||||| |||||||||||||| ||||| | || ||
Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 13540862
Query 39761 AC 39762
||
Sbjct 13540863 AC 13540864
Score = 95.1 bits (104), Expect = 2e-14
Identities = 95/123 (77%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || || |
Sbjct 13547385 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
| || |||||||| || ||||| | ||| | || ||||||| | || ||| ||||
Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501
Query 40107 ATA 40109
|||
Sbjct 13547502 ATA 13547504
>seq82
Length=9772303
Score = 96.9 bits (106), Expect = 5e-15
Identities = 192/278 (69%), Gaps = 11/278 (4%)
Strand=Plus/Minus
Query 37427 GTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCAT 37486
||| | | || ||| | || |||| | |||| | || | |||||| || ||| | |
Sbjct 7100350 GTTCACAAATGAGCCGTGCAATTCGACTGCCCTTTTTGACTTTAAATTTTTCTTTGCTAA 7100291
Query 37487 TATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTA 37546
||| | ||| || || |||| ||| || |||||||||||||| || || || ||||||
Sbjct 7100290 AATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTA 7100231
Query 37547 CATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACAAAATT 37603
|||| || |||| || ||| || || ||||||||||||||||| ||| |
Sbjct 7100230 CATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCTATTCTTCCATA--AAACTC 7100173
Query 37604 TG--GGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCTCC--AGGAAGGATG 37659
| || |||| ||| |||| || ||||| | ||| | || ||||| ||| | |
Sbjct 7100172 AGAAGGAATAGCTATCTGAATGTCGGTTTTCA-CAA-GGGCTGTCTCCATAGGTGGTACT 7100115
Query 37660 GTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697
|||||||| ||||| || || | ||||| || | |||
Sbjct 7100114 GTATAATCATACGCACTGTACAGGTCATAGCCTGTGGC 7100077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686882293906680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |