Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq60 102 6e-17 seq22 96.9 3e-15 seq43 86.0 5e-12 seq35 86.0 5e-12 >seq60 Length=14545593 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| ||| |||| || ||||| | |||||||| || |||||||| || || ||||| Sbjct 8428959 GGAGAGCGAGTTGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 8429018 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | |||||||| |||||| | Sbjct 8429019 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTG 8429078 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 8429079 ATCAGCAGAGATGA 8429092 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 8426974 CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 8427033 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||| ||||| || || || || ||||| |||||| Sbjct 8427034 ATACACTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 8427081 >seq22 Length=30314786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 174/249 (70%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || | Sbjct 19775657 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGG--------T 19775708 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 || ||| || || || |||| |||||||| |||| || |||||||| ||| | | | Sbjct 19775709 ATCTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 19775768 Query 47320 -CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCA 47378 | || || | ||| ||| || | ||| || || || || ||||||| |||||||||| Sbjct 19775769 ACTTGGAAAA-CATGTCCCAACGTCACACCCCACTTCACAAGAACTAACTATTGCTGGCA 19775827 Query 47379 TAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATT 47438 | || |||| || |||||| | || |||||| ||||||| | ||| | ||| |||| | Sbjct 19775828 TGACCTTTA-CAATTTTGATCTGGGTGGACACGTTCAAGCTC--AGAGTATGGAAAAACT 19775884 Query 47439 ATTTTCATG 47447 | ||| || Sbjct 19775885 ACCTTCCTG 19775893 >seq43 Length=20852986 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 1957914 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 1957855 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 1957854 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 1957795 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 1957794 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 1957753 >seq35 Length=24201928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 13524336 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 13524277 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| || ||||| Sbjct 13524276 AACGAGTTTCAGAGTACCAGCG 13524255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441046587435