Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq60 102 6e-17
seq22 96.9 3e-15
seq43 86.0 5e-12
seq35 86.0 5e-12
>seq60
Length=14545593
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
||||| ||| |||| || ||||| | |||||||| || |||||||| || || |||||
Sbjct 8428959 GGAGAGCGAGTTGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 8429018
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| ||||||| || | |||||||| |||||| |
Sbjct 8429019 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTG 8429078
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 8429079 ATCAGCAGAGATGA 8429092
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
||||||||||| | |||| || || ||||| ||||| || ||||||||||| |||||
Sbjct 8426974 CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 8427033
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| || || |||||||| ||||| || || || || ||||| ||||||
Sbjct 8427034 ATACACTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 8427081
>seq22
Length=30314786
Score = 96.9 bits (106), Expect = 3e-15
Identities = 174/249 (70%), Gaps = 14/249 (6%)
Strand=Plus/Plus
Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259
|| |||||| | || ||| | || ||||||||| | ||| | ||| | || |
Sbjct 19775657 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGG--------T 19775708
Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319
|| ||| || || || |||| |||||||| |||| || |||||||| ||| | | |
Sbjct 19775709 ATCTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 19775768
Query 47320 -CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCA 47378
| || || | ||| ||| || | ||| || || || || ||||||| ||||||||||
Sbjct 19775769 ACTTGGAAAA-CATGTCCCAACGTCACACCCCACTTCACAAGAACTAACTATTGCTGGCA 19775827
Query 47379 TAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATT 47438
| || |||| || |||||| | || |||||| ||||||| | ||| | ||| |||| |
Sbjct 19775828 TGACCTTTA-CAATTTTGATCTGGGTGGACACGTTCAAGCTC--AGAGTATGGAAAAACT 19775884
Query 47439 ATTTTCATG 47447
| ||| ||
Sbjct 19775885 ACCTTCCTG 19775893
>seq43
Length=20852986
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 1957914 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 1957855
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | ||||| ||||||||||| ||||| || | ||||| ||| |
Sbjct 1957854 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 1957795
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| || || | |||||||| || || ||||| ||||| |||
Sbjct 1957794 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 1957753
>seq35
Length=24201928
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 13524336 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 13524277
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| || |||||
Sbjct 13524276 AACGAGTTTCAGAGTACCAGCG 13524255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397441046587435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |