Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq5 105 5e-18
seq8 82.4 6e-11
>seq5
Length=63188916
Score = 105 bits (116), Expect = 5e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837
|| ||||||||||| |||||||| ||||| || ||| || |||||||| || ||||||
Sbjct 52112098 CCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACA 52112157
Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897
|| |||||||| |||||||| || || || ||||| || || || | | | |||
Sbjct 52112158 CCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACG 52112217
Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935
|| || || ||||| |||| || ||||| | |||||
Sbjct 52112218 TAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCAT 52112255
>seq8
Length=46046909
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 111647 CAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATT 111706
||||| |||| ||||| || ||||| || || | || | ||| || ||| | ||
Sbjct 12968480 CAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGCCTCGGTTCTCGCTGAAACTGCATTT 12968539
Query 111707 GTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCC 111766
| || | | |||||| | |||| ||| |||||||| | | ||| | || || |
Sbjct 12968540 TCAGTGGGTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCAC 12968599
Query 111767 AAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGT 111826
|||| || || ||||||||||| |||||||| ||||| || ||| || |||||||
Sbjct 12968600 CTGGCTTCAGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGT 12968659
Query 111827 TAAATGGCACACC 111839
| | ||||||||
Sbjct 12968660 TGAGGGGCACACC 12968672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391930853904181
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |