Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq8 82.4 6e-11 >seq5 Length=63188916 Score = 105 bits (116), Expect = 5e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || |||||||| || |||||| Sbjct 52112098 CCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACA 52112157 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| |||||||| || || || ||||| || || || | | | ||| Sbjct 52112158 CCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACG 52112217 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || || || ||||| |||| || ||||| | ||||| Sbjct 52112218 TAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCAT 52112255 >seq8 Length=46046909 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 111647 CAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATT 111706 ||||| |||| ||||| || ||||| || || | || | ||| || ||| | || Sbjct 12968480 CAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGCCTCGGTTCTCGCTGAAACTGCATTT 12968539 Query 111707 GTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCC 111766 | || | | |||||| | |||| ||| |||||||| | | ||| | || || | Sbjct 12968540 TCAGTGGGTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCAC 12968599 Query 111767 AAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGT 111826 |||| || || ||||||||||| |||||||| ||||| || ||| || ||||||| Sbjct 12968600 CTGGCTTCAGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGT 12968659 Query 111827 TAAATGGCACACC 111839 | | |||||||| Sbjct 12968660 TGAGGGGCACACC 12968672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391930853904181