Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq50 91.5 2e-13
seq3 91.5 2e-13
seq35 84.2 2e-11
>seq50
Length=18376352
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||| ||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 2239025 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 2238966
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| | || ||| ||||| ||||||||||||||||| | |
Sbjct 2238965 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 2238906
Query 152149 ATCGT 152153
|| ||
Sbjct 2238905 ATGGT 2238901
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| || || |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 2239025 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 2238966
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 2238965 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 2238906
Query 117425 ATCGT 117429
|| ||
Sbjct 2238905 ATGGT 2238901
>seq3
Length=68426573
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 27437849 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 27437908
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | || | |||||| ||||||||||| |||||||| || ||
Sbjct 27437909 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACG 27437968
Query 117425 ATCGT 117429
|| ||
Sbjct 27437969 ATAGT 27437973
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 27437849 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 27437908
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | || | |||||| ||||| || |||||||||||||||||
Sbjct 27437909 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACG 27437968
Query 152149 ATCGT 152153
|| ||
Sbjct 27437969 ATAGT 27437973
>seq35
Length=24201928
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||
Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| | ||| || || ||| ||||| || |||||| || ||||| ||| |||||||
Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860
Query 74890 CGAC 74893
| ||
Sbjct 13540861 CCAC 13540864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547194884302600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |