Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq50 91.5 2e-13 seq3 91.5 2e-13 seq35 84.2 2e-11 >seq50 Length=18376352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| ||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 2239025 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 2238966 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| | || ||| ||||| ||||||||||||||||| | | Sbjct 2238965 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 2238906 Query 152149 ATCGT 152153 || || Sbjct 2238905 ATGGT 2238901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || |||| ||||||||||||| || | ||||| || || Sbjct 2239025 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 2238966 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 2238965 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 2238906 Query 117425 ATCGT 117429 || || Sbjct 2238905 ATGGT 2238901 >seq3 Length=68426573 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 27437849 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 27437908 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | || | |||||| ||||||||||| |||||||| || || Sbjct 27437909 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACG 27437968 Query 117425 ATCGT 117429 || || Sbjct 27437969 ATAGT 27437973 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 27437849 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 27437908 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | || | |||||| ||||| || ||||||||||||||||| Sbjct 27437909 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACG 27437968 Query 152149 ATCGT 152153 || || Sbjct 27437969 ATAGT 27437973 >seq35 Length=24201928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | |||| Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| ||||| || |||||| || ||||| ||| ||||||| Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860 Query 74890 CGAC 74893 | || Sbjct 13540861 CCAC 13540864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194884302600