Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 131 2e-25 seq25 120 3e-22 seq15 104 3e-17 seq115 100 3e-16 seq5 96.9 4e-15 seq60 93.3 5e-14 seq9 93.3 5e-14 seq30 86.0 7e-12 >seq14 Length=35217250 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || | ||||| || ||||| || |||| |||||||| | Sbjct 7097828 ATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTCG 7097769 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || ||| | ||||| |||||||||| || ||| Sbjct 7097768 GATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCAG 7097709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 7097708 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 7097649 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||||||||| || ||| | ||| | ||||| Sbjct 7097648 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGG 7097602 >seq25 Length=29395486 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| || | | Sbjct 9574272 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCCAG 9574213 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| || |||| || || ||||| || || || || ||||| ||||| Sbjct 9574212 TGATACCATGGAGAATGTGGAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCA 9574153 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| | || || | ||||| || Sbjct 9574152 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTAGAAGATGGCCTCACTCTTTCTGACTACAA 9574093 Query 27585 TGTCCA 27590 |||| Sbjct 9574092 CCTCCA 9574087 >seq15 Length=34426505 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||| | ||||| || | |||||||| || |||||||||||||| | || Sbjct 5060836 ATGCAGATCTTTATGAAGACCCTGATGGGCAAGACCATCTCTCTTGAGGTTGAGCCCAGT 5060895 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || | ||||| || | ||| | || || | || || || Sbjct 5060896 GACACCATTGAGAATGTCAAAACCAAAATCCAAAATAAGAATGGCATCCTACCTGAGCAA 5060955 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| |||| |||||| | || || || || |||||| || | || ||||||| ||| Sbjct 5060956 CAGTGTCTGATTTTTACAGGCAAACAGCTGGAGGATAGTCACAGTCTCACAGACTACAAT 5061015 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| || ||| |||| Sbjct 5061016 ATCCAGAAAGAAACCAC 5061032 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464 |||||||||||| | ||||| || | |||||||| || |||||||||| ||| ||| | Sbjct 5141719 ATGCAAATCTTTATGAAGACCCTGATGGGCAAGACCATCTCTCTTGAGGTCGAGCTCA-G 5141777 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || || || | || | ||||| || || ||| | || || | || || || Sbjct 5141778 TGACACCACTGAGAACATCAAAACCAAAATCCAAGATAAGAACGGCATCCTACCTGAGCA 5141837 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||| |||||| | || || || || |||||| ||| | || ||||||| || Sbjct 5141838 ACAGTGTCTGATTTTTACAGGCAAACAGCTGGAGGATAGTCGCAGTCTCACAGACTACAA 5141897 Query 27585 TGTCCAAAAGGAATCCACT 27603 | |||| || || ||||| Sbjct 5141898 TATCCAGAAAGACACCACT 5141916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||| | |||| || | |||||||| || |||||||||||| | | || Sbjct 5009285 ATGCAGATTTTTATGAAGATCCTGATGGGCAAGACCATCTCTCTTGAGGTTGTGCCCAGT 5009344 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| || | ||||| || || ||| | || || | || || || Sbjct 5009345 GACACCATTGAGAATGGCAAAACCAAAATCCAAGATAAGAACGGCATCCTACCTGAGCAA 5009404 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| |||| ||||||| || || | || |||||| || | || ||||||| ||| Sbjct 5009405 CAGTGTCTGATTTTTGGAGGCAAATACCTGGAGGATAGTCACAGTCTCACAGACTACAAT 5009464 Query 27586 GTCCAAAAGGAATCCACT 27603 |||| || || ||||| Sbjct 5009465 ATCCAGAAAGACACCACT 5009482 >seq115 Length=4025681 Score = 100 bits (110), Expect = 3e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 |||||| | || ||||| ||||| ||||||||||| || ||||| | || || |||||| Sbjct 2519773 AAGGCTGAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCT 2519714 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || ||||| || | || |||| | | ||||| | | |||||||||| |||| Sbjct 2519713 GGCAAACAACTGGAAGCTGGATGTACTTTGTCTGACTACA---TTCAAAAGGAATACACT 2519657 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || ||| | |||| ||||| Sbjct 2519656 CTTCATCTTGTGTTGAGACTTCCAGGTGG 2519628 >seq5 Length=63188916 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/203 (72%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | |||||||| | ||| || |||||||| || || |||||||||||||| || Sbjct 9396817 ATGGAGATCTTTGTGA-GACCCTGGTGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 9396875 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA-GACCA 27524 || | ||| | || | || |||||||| || |||||||||| ||||||| | ||| Sbjct 9396876 GACACCATCGAGGATGTCAAAAACAAAATTCAAGAAAAGGAGGGAA-TCCTCCATGGCCA 9396934 Query 27525 GC-AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 || || |||| |||| ||||| || || ||||||| | ||| || ||||||| Sbjct 9396935 GCAAGTGTCTGGTTTTCATGGGTAAACAGCTGGAGGATGGCCATACTCTCTCAGACTACG 9396994 Query 27584 ATGTCC-AAAAGGAATCCACTCT 27605 || ||| ||| ||||||| || Sbjct 9396995 ATATCCGGAAAAAAATCCACCCT 9397017 >seq60 Length=14545593 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || ||||| || || |||| || ||||| || | |||||||||||| | Sbjct 3695707 ATGAAGATTTTTGTAAAAACCCTTAG-GGAAAGACCATCATTCTTGAGGTTGAAAAATCA 3695649 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || |||| | |||| ||| | ||||| |||| |||| ||||| || ||| Sbjct 3695648 GATACAATAAAAAATGTAAAGGGCAAAGTCCAGGATAAGGGAAGAATCCCTCCTGATCAG 3695589 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||| |||| || ||| | | | | ||||| | Sbjct 3695588 CAGAGACTGATATTTGCTGGCAAGAAACTGGAAAATGGACATGCTTCGTCCGACTACAGC 3695529 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||| ||||||||||| || ||| | ||| | | |||| Sbjct 3695528 ATTC-AAAGGAATCTACTCTTCATCTCGTGTTGAGACTTTGTGATGGA 3695482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| ||||||||||| ||||||||||| || || || || |||||||| Sbjct 8428973 AGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATATTCTGGCT 8429032 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || || || || |||||||| || || ||||||| || ||||||||| Sbjct 8429033 CAAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTGATC 8429081 >seq9 Length=45735564 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 43757317 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 43757258 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 43757257 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 43757214 >seq30 Length=26277727 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||| | | || || ||| Sbjct 20335950 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCT 20335891 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || || || || |||| || ||||| | || || || |||| || ||||| ||| Sbjct 20335890 GGGAAACAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACT 20335831 Query 27604 CTTCATCTAGTCTTGCG 27620 || || | ||| |||| Sbjct 20335830 CTGCACTTGGTCCTGCG 20335814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288393147440