Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq14 131 2e-25
seq25 120 3e-22
seq15 104 3e-17
seq115 100 3e-16
seq5 96.9 4e-15
seq60 93.3 5e-14
seq9 93.3 5e-14
seq30 86.0 7e-12
>seq14
Length=35217250
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || | ||||| || ||||| || |||| |||||||| |
Sbjct 7097828 ATGCAGATTTTCGTGAAAATCCTTACGGGAAAGACCATCGCTCTCGAGGTTGAACCCTCG 7097769
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||||| || || ||| | ||||| |||||||||| || |||
Sbjct 7097768 GATATAATAGAAAGTGCAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGATCAG 7097709
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| |||||||| || |||| ||||| | | ||||| ||
Sbjct 7097708 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 7097649
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| |||||||||||||| || ||| | ||| | |||||
Sbjct 7097648 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGG 7097602
>seq25
Length=29395486
Score = 120 bits (132), Expect = 3e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || ||||||||||| || || || ||||| || | |
Sbjct 9574272 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCCAG 9574213
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||| | ||| || |||| || || ||||| || || || || ||||| |||||
Sbjct 9574212 TGATACCATGGAGAATGTGGAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCA 9574153
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| | || || | ||||| ||
Sbjct 9574152 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTAGAAGATGGCCTCACTCTTTCTGACTACAA 9574093
Query 27585 TGTCCA 27590
||||
Sbjct 9574092 CCTCCA 9574087
>seq15
Length=34426505
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||| | ||||| || | |||||||| || |||||||||||||| | ||
Sbjct 5060836 ATGCAGATCTTTATGAAGACCCTGATGGGCAAGACCATCTCTCTTGAGGTTGAGCCCAGT 5060895
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || | ||||| || | ||| | || || | || || ||
Sbjct 5060896 GACACCATTGAGAATGTCAAAACCAAAATCCAAAATAAGAATGGCATCCTACCTGAGCAA 5060955
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| |||| |||||| | || || || || |||||| || | || ||||||| |||
Sbjct 5060956 CAGTGTCTGATTTTTACAGGCAAACAGCTGGAGGATAGTCACAGTCTCACAGACTACAAT 5061015
Query 27586 GTCCAAAAGGAATCCAC 27602
|||| || ||| ||||
Sbjct 5061016 ATCCAGAAAGAAACCAC 5061032
Score = 100 bits (110), Expect = 3e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGG 27464
|||||||||||| | ||||| || | |||||||| || |||||||||| ||| ||| |
Sbjct 5141719 ATGCAAATCTTTATGAAGACCCTGATGGGCAAGACCATCTCTCTTGAGGTCGAGCTCA-G 5141777
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || || || | || | ||||| || || ||| | || || | || || ||
Sbjct 5141778 TGACACCACTGAGAACATCAAAACCAAAATCCAAGATAAGAACGGCATCCTACCTGAGCA 5141837
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| |||| |||||| | || || || || |||||| ||| | || ||||||| ||
Sbjct 5141838 ACAGTGTCTGATTTTTACAGGCAAACAGCTGGAGGATAGTCGCAGTCTCACAGACTACAA 5141897
Query 27585 TGTCCAAAAGGAATCCACT 27603
| |||| || || |||||
Sbjct 5141898 TATCCAGAAAGACACCACT 5141916
Score = 82.4 bits (90), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||| | |||| || | |||||||| || |||||||||||| | | ||
Sbjct 5009285 ATGCAGATTTTTATGAAGATCCTGATGGGCAAGACCATCTCTCTTGAGGTTGTGCCCAGT 5009344
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| || | ||||| || || ||| | || || | || || ||
Sbjct 5009345 GACACCATTGAGAATGGCAAAACCAAAATCCAAGATAAGAACGGCATCCTACCTGAGCAA 5009404
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| |||| ||||||| || || | || |||||| || | || ||||||| |||
Sbjct 5009405 CAGTGTCTGATTTTTGGAGGCAAATACCTGGAGGATAGTCACAGTCTCACAGACTACAAT 5009464
Query 27586 GTCCAAAAGGAATCCACT 27603
|||| || || |||||
Sbjct 5009465 ATCCAGAAAGACACCACT 5009482
>seq115
Length=4025681
Score = 100 bits (110), Expect = 3e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
|||||| | || ||||| ||||| ||||||||||| || ||||| | || || ||||||
Sbjct 2519773 AAGGCTGAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCT 2519714
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| || ||||| || | || |||| | | ||||| | | |||||||||| ||||
Sbjct 2519713 GGCAAACAACTGGAAGCTGGATGTACTTTGTCTGACTACA---TTCAAAAGGAATACACT 2519657
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| || ||| | |||| |||||
Sbjct 2519656 CTTCATCTTGTGTTGAGACTTCCAGGTGG 2519628
>seq5
Length=63188916
Score = 96.9 bits (106), Expect = 4e-15
Identities = 147/203 (72%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | |||||||| | ||| || |||||||| || || |||||||||||||| ||
Sbjct 9396817 ATGGAGATCTTTGTGA-GACCCTGGTGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 9396875
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA-GACCA 27524
|| | ||| | || | || |||||||| || |||||||||| ||||||| | |||
Sbjct 9396876 GACACCATCGAGGATGTCAAAAACAAAATTCAAGAAAAGGAGGGAA-TCCTCCATGGCCA 9396934
Query 27525 GC-AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|| || |||| |||| ||||| || || ||||||| | ||| || |||||||
Sbjct 9396935 GCAAGTGTCTGGTTTTCATGGGTAAACAGCTGGAGGATGGCCATACTCTCTCAGACTACG 9396994
Query 27584 ATGTCC-AAAAGGAATCCACTCT 27605
|| ||| ||| ||||||| ||
Sbjct 9396995 ATATCCGGAAAAAAATCCACCCT 9397017
>seq60
Length=14545593
Score = 93.3 bits (102), Expect = 5e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | || ||||| || || |||| || ||||| || | |||||||||||| |
Sbjct 3695707 ATGAAGATTTTTGTAAAAACCCTTAG-GGAAAGACCATCATTCTTGAGGTTGAAAAATCA 3695649
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || |||| | |||| ||| | ||||| |||| |||| ||||| || |||
Sbjct 3695648 GATACAATAAAAAATGTAAAGGGCAAAGTCCAGGATAAGGGAAGAATCCCTCCTGATCAG 3695589
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||| |||| || ||| | | | | ||||| |
Sbjct 3695588 CAGAGACTGATATTTGCTGGCAAGAAACTGGAAAATGGACATGCTTCGTCCGACTACAGC 3695529
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | ||||||||| ||||||||||| || ||| | ||| | | ||||
Sbjct 3695528 ATTC-AAAGGAATCTACTCTTCATCTCGTGTTGAGACTTTGTGATGGA 3695482
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784
||| ||||| ||||||||||| ||||||||||| || || || || ||||||||
Sbjct 8428973 AGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATATTCTGGCT 8429032
Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
|| || || || |||||||| || || ||||||| || |||||||||
Sbjct 8429033 CAAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTGATC 8429081
>seq9
Length=45735564
Score = 93.3 bits (102), Expect = 5e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || || ||||||||| | ||
Sbjct 43757317 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 43757258
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||||| ||| | || |||||||| || |||||||||||
Sbjct 43757257 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 43757214
>seq30
Length=26277727
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||| | | || || |||
Sbjct 20335950 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCT 20335891
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| || || || || |||| || ||||| | || || || |||| || ||||| |||
Sbjct 20335890 GGGAAACAGCTGGAAGATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACT 20335831
Query 27604 CTTCATCTAGTCTTGCG 27620
|| || | ||| ||||
Sbjct 20335830 CTGCACTTGGTCCTGCG 20335814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570288393147440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |