Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq82 127 3e-24 >seq82 Length=9772303 Score = 127 bits (140), Expect = 3e-24 Identities = 245/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| || || ||| | Sbjct 5824502 GAAGAGGCGGAGTTTCCAATAGCGTATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 5824443 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 5824442 GATAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAAA 5824383 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTG 13862 || || | || || | || || | ||| ||| || ||| |||||| Sbjct 5824382 AAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATTGCCTCCTGTTTCAGTAACGTC 5824323 Query 13863 GCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGAC 13922 ||||| | |||| | |||||||||| || |||||||| || ||||| ||| Sbjct 5824322 TTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGGGTTCAGGCTGAC 5824263 Query 13923 CTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTGGAGGTACCTGCTCAAC 13979 |||| ||||||| |||||| || || | || || | |||| |||| || |||| Sbjct 5824262 CTCAACTGCATGCAGGACCTCTACAGCAT---GAGTGCAGACTGGAAGTACTTGATCAAT 5824206 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || ||||| ||||| || || | || ||||||||||| || || || ||| ||| Sbjct 5824205 CTTTGCGGTATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAG 5824149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658713780901120