Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 4e-32
seq4 91.5 1e-13
>seq5
Length=63188916
Score = 152 bits (168), Expect = 4e-32
Identities = 132/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||
Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| |||||||||||||| ||||| || || ||||| |||| |
Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| ||||| || | || ||||||||||| |||||||||||
Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATGAG 52112258
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| ||||| || |||||||||||||| || || || || || || | ||
Sbjct 52115880 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGACCTAAATC 52115939
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||||| ||| ||| ||| ||||||| | ||||| ||| || ||||| ||
Sbjct 52115940 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGACGTCTCGGGACCCATTGGCATC 52115999
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| || || || | |||||||| ||
Sbjct 52116000 CCAGATTTTCACTCCCTTGGAAGACAGTTCGTTAGCATTTGTGGATCC 52116047
>seq4
Length=66015319
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || ||||| || |||| || || ||||| | | ||||| |||||| || ||
Sbjct 56962627 TTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 56962568
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| |||||||||||||| ||||||| ||||| || |||
Sbjct 56962567 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406295113460004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |