Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq5 159 3e-34
seq8 111 1e-19
>seq5
Length=63188916
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | |||
Sbjct 52112107 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 52112166
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| | || || ||||||||||||||||| || ||| | |||||||| |||
Sbjct 52112167 ATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 52112226
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|| || | |||||||| || || ||||| ||||| |||||
Sbjct 52112227 CAAAGCGCATGGCACGGAGGTAGAGCCATGAGAGGAAGATC 52112267
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||| ||||| || || |||||||| | || ||||| |||||||| | |||
Sbjct 52112267 GATCTTCCTCTCATGGCTCTACCTCCGTGCCATGCGCTTTGCCAGTTCTACGTGGTGAAC 52112208
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| || || | |||||||||||||| | || ||||| |||
Sbjct 52112207 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 52112148
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|||||||| || ||||| |||||||| ||||||||||| ||
Sbjct 52112147 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 52112107
>seq8
Length=46046909
Score = 111 bits (122), Expect = 1e-19
Identities = 192/279 (69%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453
||| || |||| ||||| || | | || ||| || ||||||||| | | ||| |
Sbjct 12968394 CTAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGAC 12968453
Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGG 6513
|| | | |||||||| ||| || ||||| |||||||||| ||||| ||
Sbjct 12968454 TTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 12968513
Query 6514 TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGC 6573
| || ||||| || | ||| || || | || | ||| |||||||| ||||| ||
Sbjct 12968514 CCTCGGTTCTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGTGC 12968573
Query 6574 ATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633
||| ||||| ||||| || | || || || || || || || |||||||||||
Sbjct 12968574 ATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATGTA 12968633
Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672
|||||||| ||||| || |||||||||| ||||| ||
Sbjct 12968634 GGTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACC 12968672
Score = 111 bits (122), Expect = 1e-19
Identities = 192/279 (69%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 34673 GGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG 34732
|| ||||| |||||||||| || ||||| |||||||| ||||||||||| || ||
Sbjct 12968672 GGTGTGCCCCTCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACC 12968613
Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792
|| || || || || | || ||||| ||||| ||||| ||||| |||||||| |||
Sbjct 12968612 GGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCAC 12968553
Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852
| || | || || ||| | || ||||| || | || ||||| ||||||||||
Sbjct 12968552 GTTGACCCACTGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATC 12968493
Query 34853 ATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912
||||| || ||| |||||||| | | || | ||| | | |||||||||
Sbjct 12968492 CTTCGAAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTAC 12968433
Query 34913 CGGCCGCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAG 34951
|| ||| || | | || ||||| |||| || |||
Sbjct 12968432 AATCCACACCCGACTATTAAAATGGAAATGGCTGTTTAG 12968394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448245102674640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |