Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5 159 3e-34 seq8 111 1e-19 >seq5 Length=63188916 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 52112107 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 52112166 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| | || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 52112167 ATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 52112226 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||||| || || ||||| ||||| ||||| Sbjct 52112227 CAAAGCGCATGGCACGGAGGTAGAGCCATGAGAGGAAGATC 52112267 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || |||||||| | || ||||| |||||||| | ||| Sbjct 52112267 GATCTTCCTCTCATGGCTCTACCTCCGTGCCATGCGCTTTGCCAGTTCTACGTGGTGAAC 52112208 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | |||||||||||||| | || ||||| ||| Sbjct 52112207 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 52112148 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 52112147 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 52112107 >seq8 Length=46046909 Score = 111 bits (122), Expect = 1e-19 Identities = 192/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 ||| || |||| ||||| || | | || ||| || ||||||||| | | ||| | Sbjct 12968394 CTAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGAC 12968453 Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGG 6513 || | | |||||||| ||| || ||||| |||||||||| ||||| || Sbjct 12968454 TTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 12968513 Query 6514 TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGC 6573 | || ||||| || | ||| || || | || | ||| |||||||| ||||| || Sbjct 12968514 CCTCGGTTCTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGTGC 12968573 Query 6574 ATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTA 6633 ||| ||||| ||||| || | || || || || || || || ||||||||||| Sbjct 12968574 ATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATGTA 12968633 Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 |||||||| ||||| || |||||||||| ||||| || Sbjct 12968634 GGTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACC 12968672 Score = 111 bits (122), Expect = 1e-19 Identities = 192/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 34673 GGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG 34732 || ||||| |||||||||| || ||||| |||||||| ||||||||||| || || Sbjct 12968672 GGTGTGCCCCTCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACC 12968613 Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || || || || || | || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 12968612 GGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCAC 12968553 Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852 | || | || || ||| | || ||||| || | || ||||| |||||||||| Sbjct 12968552 GTTGACCCACTGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATC 12968493 Query 34853 ATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912 ||||| || ||| |||||||| | | || | ||| | | ||||||||| Sbjct 12968492 CTTCGAAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTAC 12968433 Query 34913 CGGCCGCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAG 34951 || ||| || | | || ||||| |||| || ||| Sbjct 12968432 AATCCACACCCGACTATTAAAATGGAAATGGCTGTTTAG 12968394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448245102674640