Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq61 183 3e-41
seq17 138 9e-28
seq8 125 6e-24
>seq61
Length=14532071
Score = 183 bits (202), Expect = 3e-41
Identities = 194/256 (76%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329
|||| | || ||||| | ||||| |||||||| ||| | || || || |||||||
Sbjct 8637060 AAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTGAGTCCAGAAA 8637001
Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389
|||||| ||| || || || |||| |||||||| || ||||| || || || || || |
Sbjct 8637000 ACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAAGA 8636941
Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449
| ||||| ||| |||| ||||| || ||| |||| || ||||||||||| || || |||
Sbjct 8636940 TAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGG 8636881
Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509
| ||||| ||||| ||||| || | ||||| || ||||| || |||||||| ||||||
Sbjct 8636880 AGGATGAGGGGTGTTACAATTGCCTCTTTAATACCTTTGGTTCCGGGAAGATCTCAGGAG 8636821
Query 1510 TAGGGTGTCTAACCCT 1525
||| || || |||||
Sbjct 8636820 TAGCCTGCCTCACCCT 8636805
>seq17
Length=33267342
Score = 138 bits (152), Expect = 9e-28
Identities = 343/508 (68%), Gaps = 16/508 (3%)
Strand=Plus/Plus
Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226
|| |||||||| ||||| || | | ||||| ||||| || || | |||||||| ||
Sbjct 16275436 AACATGGGCATCGGAAAGAACAGGGACCTGCCCTGGCCCCCACTCCAGAATGAATT-AAG 16275494
Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283
|||| |||| ||||| | | ||||| || ||||||||| | || ||||||
Sbjct 16275495 TATTTCCAAAGGATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATCTGGTGATTATG 16275554
Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAA-AAGCAGGCCTTTGAACAACAGAATAAA 2342
|| || ||||| | ||| || |||| || || || ||||| || ||||||| ||
Sbjct 16275555 GGTAGGAAGACCTAGTTCTCCATTCCTGAGAAGAATCAA-CCTTTAAAGGACAGAATTAA 16275613
Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402
| |||||||| ||| | ||||| || || |||| ||||| ||| |||||| |
Sbjct 16275614 TAAAGTTCTCAGCAGAGAACTTAAGGAACCTCCACAAAAAGCTCATTTTCTTGCAA---G 16275670
Query 2403 TATAGATCACGCTCTGGAAATTATAATAGG--ACCAGAATTAAAAGACAGGGTGGATAAG 2460
| | ||| | | || | | || | || | ||||||||||| | | | || || |
Sbjct 16275671 TTTGGATGATACCCTA-ACACTA-ACTAAGCAACCAGAATTAACAAATAAAGTAGACATA 16275728
Query 2461 ATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACA 2519
|||||||| | || || || ||||| || |||| ||| | |||| | || | |
Sbjct 16275729 GTTTGGATAGTGGGAGGCAGTTCTGTTTACAAGGAAGCCATGAACAAGC-CAGGCCATCT 16275787
Query 2520 GATG-CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAA 2578
| | || ||| | ||||| || | || ||||| || |||| |||| || |||||||
Sbjct 16275788 TAAGACTATTTGTGACAAGCATCATACAGGAATTTAAAAGTGACACATTTTTTCCAGAAA 16275847
Query 2579 TTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAG 2638
|| || | ||| | |||| | | |||| |||||||||| |||| || || |
Sbjct 16275848 TTGATTTGGAGAAAAATAAACTTGTCCCAGAATACCCAGGTGTTCTTTCTGATGTCCAGG 16275907
Query 2639 AAGAAAATGGAATTAGATACAAATTTGA 2666
| || || || |||| |||||||||||
Sbjct 16275908 AGGAGAAAGGCATTAAGTACAAATTTGA 16275935
>seq8
Length=46046909
Score = 125 bits (138), Expect = 6e-24
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 31260326 GTAGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 31260267
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || |||||||||||||||||||| | | || | |||| || |||| |
Sbjct 31260266 TTCGGTGGGGTCATGTGTGTGGAAAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 31260207
Query 3365 ATTGCCGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAAC 3424
|| ||| ||||||||| || | ||| || | | ||||||||| || |||
Sbjct 31260206 ATCGCCCTGTGGATGACTGAGTACCTGAACCGACACCTGCACACGTGGATCCAGGATAAC 31260147
Query 3425 GGAGGATGG 3433
||||| |||
Sbjct 31260146 GGAGGCTGG 31260138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414461206217068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |