Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq61 183 3e-41 seq17 138 9e-28 seq8 125 6e-24 >seq61 Length=14532071 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 |||| | || ||||| | ||||| |||||||| ||| | || || || ||||||| Sbjct 8637060 AAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTGAGTCCAGAAA 8637001 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || || |||| |||||||| || ||||| || || || || || | Sbjct 8637000 ACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAAGA 8636941 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| ||| |||| ||||| || ||| |||| || ||||||||||| || || ||| Sbjct 8636940 TAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGG 8636881 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||| ||||| ||||| || | ||||| || ||||| || |||||||| |||||| Sbjct 8636880 AGGATGAGGGGTGTTACAATTGCCTCTTTAATACCTTTGGTTCCGGGAAGATCTCAGGAG 8636821 Query 1510 TAGGGTGTCTAACCCT 1525 ||| || || ||||| Sbjct 8636820 TAGCCTGCCTCACCCT 8636805 >seq17 Length=33267342 Score = 138 bits (152), Expect = 9e-28 Identities = 343/508 (68%), Gaps = 16/508 (3%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| ||||| || | | ||||| ||||| || || | |||||||| || Sbjct 16275436 AACATGGGCATCGGAAAGAACAGGGACCTGCCCTGGCCCCCACTCCAGAATGAATT-AAG 16275494 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| |||| ||||| | | ||||| || ||||||||| | || |||||| Sbjct 16275495 TATTTCCAAAGGATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATCTGGTGATTATG 16275554 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAA-AAGCAGGCCTTTGAACAACAGAATAAA 2342 || || ||||| | ||| || |||| || || || ||||| || ||||||| || Sbjct 16275555 GGTAGGAAGACCTAGTTCTCCATTCCTGAGAAGAATCAA-CCTTTAAAGGACAGAATTAA 16275613 Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402 | |||||||| ||| | ||||| || || |||| ||||| ||| |||||| | Sbjct 16275614 TAAAGTTCTCAGCAGAGAACTTAAGGAACCTCCACAAAAAGCTCATTTTCTTGCAA---G 16275670 Query 2403 TATAGATCACGCTCTGGAAATTATAATAGG--ACCAGAATTAAAAGACAGGGTGGATAAG 2460 | | ||| | | || | | || | || | ||||||||||| | | | || || | Sbjct 16275671 TTTGGATGATACCCTA-ACACTA-ACTAAGCAACCAGAATTAACAAATAAAGTAGACATA 16275728 Query 2461 ATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACA 2519 |||||||| | || || || ||||| || |||| ||| | |||| | || | | Sbjct 16275729 GTTTGGATAGTGGGAGGCAGTTCTGTTTACAAGGAAGCCATGAACAAGC-CAGGCCATCT 16275787 Query 2520 GATG-CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAA 2578 | | || ||| | ||||| || | || ||||| || |||| |||| || ||||||| Sbjct 16275788 TAAGACTATTTGTGACAAGCATCATACAGGAATTTAAAAGTGACACATTTTTTCCAGAAA 16275847 Query 2579 TTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAG 2638 || || | ||| | |||| | | |||| |||||||||| |||| || || | Sbjct 16275848 TTGATTTGGAGAAAAATAAACTTGTCCCAGAATACCCAGGTGTTCTTTCTGATGTCCAGG 16275907 Query 2639 AAGAAAATGGAATTAGATACAAATTTGA 2666 | || || || |||| ||||||||||| Sbjct 16275908 AGGAGAAAGGCATTAAGTACAAATTTGA 16275935 >seq8 Length=46046909 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 31260326 GTAGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 31260267 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || |||||||||||||||||||| | | || | |||| || |||| | Sbjct 31260266 TTCGGTGGGGTCATGTGTGTGGAAAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 31260207 Query 3365 ATTGCCGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAAC 3424 || ||| ||||||||| || | ||| || | | ||||||||| || ||| Sbjct 31260206 ATCGCCCTGTGGATGACTGAGTACCTGAACCGACACCTGCACACGTGGATCCAGGATAAC 31260147 Query 3425 GGAGGATGG 3433 ||||| ||| Sbjct 31260146 GGAGGCTGG 31260138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414461206217068