Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq14 163 7e-35
seq25 131 4e-25
seq30 114 3e-20
seq72 100 7e-16
seq44 98.7 2e-15
>seq14
Length=35217250
Score = 163 bits (180), Expect = 7e-35
Identities = 171/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|| |||||| | ||||| |||||||||||||| ||||| ||||| || || | | ||
Sbjct 7097607 ACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 7097666
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||| |||||||| || ||||| || | ||| || ||| |||||| |||
Sbjct 7097667 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCC 7097726
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| | ||||||||| || | |||| || | || ||| ||||||||||||
Sbjct 7097727 TTCCTTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAG 7097786
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||| ||||||||||| || | || || || | |||||| ||
Sbjct 7097787 AGCGATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831
>seq25
Length=29395486
Score = 131 bits (144), Expect = 4e-25
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||| ||||| || || |||||| ||| ||| || || | ||| || ||||||
Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||||||||| ||||| || | || ||||||||||| | ||||| || |||
Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| | ||| || || ||||| ||| | ||| ||||| || ||||| |||
Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| || || | ||||||||
Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 9574274
>seq30
Length=26277727
Score = 114 bits (126), Expect = 3e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| ||||| || ||||| |||||||| ||||| | ||||| | |||||||
Sbjct 20335817 AGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCT 20335876
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || || |||||||| | | || |||||||| || | || |||||||||
Sbjct 20335877 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 20335936
Query 211023 TGGATCTT 211030
||||||||
Sbjct 20335937 TGGATCTT 20335944
>seq72
Length=11851330
Score = 100 bits (110), Expect = 7e-16
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967
||| |||||||||||| | ||| | ||| | | || | | || | |||||| |||||
Sbjct 5386371 AAGATGAAGAGTGGACGCCTTT-GAATGCTGTGGTCAGACATAGTACCTCCATCCTCCAG 5386313
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
||||||| || ||||| || | ||| || |||||| ||| |||||||| |||||||
Sbjct 5386312 CTGCTTGTTGGCAAAGATCAGTCTTTGCTGATCAGGACGAATTCCTTCCTCAACCTGGAT 5386253
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||| || || ||||| || || | ||| ||||||||||||| |||| ||||
Sbjct 5386252 CTTGGCCTTTACCTTTTCCATTGTAT-TGAGGGTTCAACCTCGAGAATGATGTTCTT 5386197
>seq44
Length=19882732
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||| || ||||||||||| ||||| || | || | || || | || || ||||||||
Sbjct 2427275 GTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCCTCCAGCTG 2427334
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||||| || || | || | || |||||||| || | || |||| ||| ||||| ||
Sbjct 2427335 TTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCTTGGATTTT 2427394
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| || || || || ||||| | || |||| ||| ||||| ||||| ||| |
Sbjct 2427395 AGCTTTGACATTCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGGTCTTGCCCAT 2427454
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| | ||| ||
Sbjct 2427455 CAGGGTCTTCACAAAGATCTGTAT 2427478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159106153002755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |