Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 163 7e-35 seq25 131 4e-25 seq30 114 3e-20 seq72 100 7e-16 seq44 98.7 2e-15 >seq14 Length=35217250 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | ||||| |||||||||||||| ||||| ||||| || || | | || Sbjct 7097607 ACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 7097666 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| |||||||| || ||||| || | ||| || ||| |||||| ||| Sbjct 7097667 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCC 7097726 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| | ||||||||| || | |||| || | || ||| |||||||||||| Sbjct 7097727 TTCCTTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAG 7097786 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||| ||||||||||| || | || || || | |||||| || Sbjct 7097787 AGCGATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831 >seq25 Length=29395486 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||| ||||| || || |||||| ||| ||| || || | ||| || |||||| Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| | ||| || || ||||| ||| | ||| ||||| || ||||| ||| Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||||| Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 9574274 >seq30 Length=26277727 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| || ||||| |||||||| ||||| | ||||| | ||||||| Sbjct 20335817 AGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCT 20335876 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || |||||||| | | || |||||||| || | || ||||||||| Sbjct 20335877 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 20335936 Query 211023 TGGATCTT 211030 |||||||| Sbjct 20335937 TGGATCTT 20335944 >seq72 Length=11851330 Score = 100 bits (110), Expect = 7e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||| |||||||||||| | ||| | ||| | | || | | || | |||||| ||||| Sbjct 5386371 AAGATGAAGAGTGGACGCCTTT-GAATGCTGTGGTCAGACATAGTACCTCCATCCTCCAG 5386313 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||||||| || ||||| || | ||| || |||||| ||| |||||||| ||||||| Sbjct 5386312 CTGCTTGTTGGCAAAGATCAGTCTTTGCTGATCAGGACGAATTCCTTCCTCAACCTGGAT 5386253 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || ||||| || || | ||| ||||||||||||| |||| |||| Sbjct 5386252 CTTGGCCTTTACCTTTTCCATTGTAT-TGAGGGTTCAACCTCGAGAATGATGTTCTT 5386197 >seq44 Length=19882732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||||||||| ||||| || | || | || || | || || |||||||| Sbjct 2427275 GTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTGCCGCCGTCCTCCAGCTG 2427334 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| || || | || | || |||||||| || | || |||| ||| ||||| || Sbjct 2427335 TTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCCTCCTCGTCTTGGATTTT 2427394 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || || ||||| | || |||| ||| ||||| ||||| ||| | Sbjct 2427395 AGCTTTGACATTCTCAATAATGTCACCGGGCTCGACCTTGAGGGTGATGGTCTTGCCCAT 2427454 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||| || Sbjct 2427455 CAGGGTCTTCACAAAGATCTGTAT 2427478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159106153002755