Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq30 107 5e-18
seq25 107 5e-18
seq3087 100 7e-16
seq8 96.9 8e-15
>seq30
Length=26277727
Score = 107 bits (118), Expect = 5e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | ||| ||||| |||||||| |||| |||||||| | || || | |||||
Sbjct 20335816 CAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATC 20335875
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| |||||||||||||| | | || ||||| || || || || ||||||||
Sbjct 20335876 TTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 20335935
Query 225621 TTGGATCTT 225629
||||||||
Sbjct 20335936 CTGGATCTT 20335944
>seq25
Length=29395486
Score = 107 bits (118), Expect = 5e-18
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||| ||||| || || || ||| ||| ||||| || | | ||| ||||||
Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| || || ||||| || | || ||||| || || || ||||| || ||
Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| || |||| || ||||| || || |||||| || | ||||| |||
Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||| || || | ||| | |||||||||
Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 9574274
>seq3087
Length=16832
Score = 100 bits (110), Expect = 7e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
||||| || || | || || ||||| || || || ||||||||| | || ||||| |
Sbjct 5509 TACAATGTAGTTGTAACCGCCCATGCATTCGTAATAATTTTCTTTATAGTCATGCCTATC 5568
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
|| || || || |||||||||||||| || || ||||| ||||| || || || || ||
Sbjct 5569 ATAATCGGAGGATTCGGAAATTGATTAGTCCCCTTAATAATTGGAGCACCCGACATAGCA 5628
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
|| ||| | | ||||| ||||| || ||| | || || || || || ||||
Sbjct 5629 TTCCCACGAATAAACAACATAAGCTTCTGACTTCTCCCACCATCATTTCTTCT 5681
>seq8
Length=46046909
Score = 96.9 bits (106), Expect = 8e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || || | || ||| ||| |||||||||||||| |||||||
Sbjct 16399937 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 16399878
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122
| ||||||||||| ||||||||||| || ||| ||||| ||||
Sbjct 16399877 GCAAACATGCTTTGATCATCTACGACGACTTATCCAAACAGGTCAA 16399832
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 4454 TAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATAT 4513
|||||| ||| || |||| || |||||||| ||||| || ||||| || || || |
Sbjct 16399480 TAATCATAAAAAT----AATACCTGTCCATCAGTGATAGAAATGACATTCGTTGGAATGT 16399535
Query 4514 AAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCAC 4573
||||||| |||||||| || |||||||| | || ||||| || || | || |||||||
Sbjct 16399536 AAGCAGATACATCACCAGCCTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCAC 16399595
Query 4574 CAAAA 4578
|||||
Sbjct 16399596 CAAAA 16399600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192484032782378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |