Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30 107 5e-18 seq25 107 5e-18 seq3087 100 7e-16 seq8 96.9 8e-15 >seq30 Length=26277727 Score = 107 bits (118), Expect = 5e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||| |||||||| |||| |||||||| | || || | ||||| Sbjct 20335816 CAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATC 20335875 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| |||||||||||||| | | || ||||| || || || || |||||||| Sbjct 20335876 TTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 20335935 Query 225621 TTGGATCTT 225629 |||||||| Sbjct 20335936 CTGGATCTT 20335944 >seq25 Length=29395486 Score = 107 bits (118), Expect = 5e-18 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||| ||||| || || || ||| ||| ||||| || | | ||| |||||| Sbjct 9574064 AGGATCAGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGTGAGGCCATCT 9574119 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || ||||| || | || ||||| || || || ||||| || || Sbjct 9574120 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9574179 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || |||| || ||||| || || |||||| || | ||||| ||| Sbjct 9574180 TGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTC 9574239 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||||||| Sbjct 9574240 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 9574274 >seq3087 Length=16832 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| || || | || || ||||| || || || ||||||||| | || ||||| | Sbjct 5509 TACAATGTAGTTGTAACCGCCCATGCATTCGTAATAATTTTCTTTATAGTCATGCCTATC 5568 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || || || |||||||||||||| || || ||||| ||||| || || || || || Sbjct 5569 ATAATCGGAGGATTCGGAAATTGATTAGTCCCCTTAATAATTGGAGCACCCGACATAGCA 5628 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | ||||| ||||| || ||| | || || || || || |||| Sbjct 5629 TTCCCACGAATAAACAACATAAGCTTCTGACTTCTCCCACCATCATTTCTTCT 5681 >seq8 Length=46046909 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 16399937 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 16399878 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| ||||||||||| || ||| ||||| |||| Sbjct 16399877 GCAAACATGCTTTGATCATCTACGACGACTTATCCAAACAGGTCAA 16399832 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 4454 TAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATAT 4513 |||||| ||| || |||| || |||||||| ||||| || ||||| || || || | Sbjct 16399480 TAATCATAAAAAT----AATACCTGTCCATCAGTGATAGAAATGACATTCGTTGGAATGT 16399535 Query 4514 AAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCAC 4573 ||||||| |||||||| || |||||||| | || ||||| || || | || ||||||| Sbjct 16399536 AAGCAGATACATCACCAGCCTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCAC 16399595 Query 4574 CAAAA 4578 ||||| Sbjct 16399596 CAAAA 16399600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192484032782378