Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 seq4 91.5 1e-13 >seq5 Length=63188916 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||| Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || ||||||||||| |||||||| || ||||| |||| | Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||| || ||||||||| Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATGAGA 52112259 >seq4 Length=66015319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || ||||| || |||| || | ||||| | | ||||| |||||| || || Sbjct 56962627 TTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 56962568 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 56962567 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147918998082