Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq82 120 3e-22
seq60 100 2e-16
seq35 89.7 4e-13
seq6 84.2 2e-11
>seq82
Length=9772303
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || |||||||| ||||| || || | ||||| | || || ||| |||||||
Sbjct 7100133 AGCCCTTGTGAAAACCGACATTCAGATAGCTATTCCTTCTGAGTTTTATGGAAGAATAGC 7100192
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| ||||| ||||| | |||||||| || || || || || ||||| ||||||
Sbjct 7100193 TCCACATTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 7100252
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| ||||| || | ||||||||||| | |||||||| || ||
Sbjct 7100253 AGATTATAGAGGAAATGTTGGTGTTATACTGTTTAATTTTAGCAAAGAAAAAT-TTAAAG 7100311
Query 31942 TATAAAAAAGGGC 31954
| |||||||||
Sbjct 7100312 --TCAAAAAGGGC 7100322
>seq60
Length=14545593
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| |||||||| ||||| || || |||||||| | |||||||| | |||| || ||
Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973
Query 4692 ACTAATCG 4699
|| | |||
Sbjct 8428972 ACAACTCG 8428965
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||| ||||| ||||| || |||
Sbjct 8427080 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 8427021
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| || || || || || || | || ||||| || |||||||| | | ||| | |||
Sbjct 8427020 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTCC 8426961
Query 4932 AC 4933
||
Sbjct 8426960 AC 8426959
>seq35
Length=24201928
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
||||| || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 13524258 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 13524317
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 13524318 ATAAAATCAAAGGGATT 13524334
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 13547385 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
| ||||| ||||| |||| || || | |||| || |||||||| || | ||| || |
Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 13547502 ATAAGTCAAC 13547511
>seq6
Length=61284144
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858
||||| ||||| || ||| | ||||||| ||||| ||||| || |||||||| ||
Sbjct 35268889 CCTTCTGGGTGTTATGGAAAAGTAGCTCCACATTCTGGCTTGGCTGTCAAACACTTCATA 35268948
Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918
| || || || ||||| || | ||| ||||||||||| ||||| ||| |||||
Sbjct 35268949 AATGTAGGAGCTGGTGTCATGAAGGAAGATTATAGAGGAAATGTTGGTGGTGTACTGTTT 35269008
Query 31919 AATTTTGG---AGAAAA 31932
|||||||| ||||||
Sbjct 35269009 AATTTTGGCAAAGAAAA 35269025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427033533192971
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |