Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq82 120 3e-22 seq60 100 2e-16 seq35 89.7 4e-13 seq6 84.2 2e-11 >seq82 Length=9772303 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||||||| ||||| || || | ||||| | || || ||| ||||||| Sbjct 7100133 AGCCCTTGTGAAAACCGACATTCAGATAGCTATTCCTTCTGAGTTTTATGGAAGAATAGC 7100192 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | |||||||| || || || || || ||||| |||||| Sbjct 7100193 TCCACATTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 7100252 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| || | ||||||||||| | |||||||| || || Sbjct 7100253 AGATTATAGAGGAAATGTTGGTGTTATACTGTTTAATTTTAGCAAAGAAAAAT-TTAAAG 7100311 Query 31942 TATAAAAAAGGGC 31954 | ||||||||| Sbjct 7100312 --TCAAAAAGGGC 7100322 >seq60 Length=14545593 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| ||||| || || |||||||| | |||||||| | |||| || || Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973 Query 4692 ACTAATCG 4699 || | ||| Sbjct 8428972 ACAACTCG 8428965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||| ||||| ||||| || ||| Sbjct 8427080 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCA 8427021 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || || || || || | || ||||| || |||||||| | | ||| | ||| Sbjct 8427020 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTCC 8426961 Query 4932 AC 4933 || Sbjct 8426960 AC 8426959 >seq35 Length=24201928 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 13524258 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 13524317 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 13524318 ATAAAATCAAAGGGATT 13524334 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 13547385 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 13547441 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| ||||| |||| || || | |||| || |||||||| || | ||| || | Sbjct 13547442 CGTGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 13547501 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 13547502 ATAAGTCAAC 13547511 >seq6 Length=61284144 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858 ||||| ||||| || ||| | ||||||| ||||| ||||| || |||||||| || Sbjct 35268889 CCTTCTGGGTGTTATGGAAAAGTAGCTCCACATTCTGGCTTGGCTGTCAAACACTTCATA 35268948 Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918 | || || || ||||| || | ||| ||||||||||| ||||| ||| ||||| Sbjct 35268949 AATGTAGGAGCTGGTGTCATGAAGGAAGATTATAGAGGAAATGTTGGTGGTGTACTGTTT 35269008 Query 31919 AATTTTGG---AGAAAA 31932 |||||||| |||||| Sbjct 35269009 AATTTTGGCAAAGAAAA 35269025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033533192971