Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 2e-29
>seq5
Length=63188916
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||
Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| |||||||||||||| ||||| || || ||||| || |
Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| ||||| || | || ||||||||||| |||||||||||
Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATGAG 52112258
Score = 82.4 bits (90), Expect = 6e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| ||||| || ||||||||||| || || || || || || || | ||
Sbjct 52115880 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGACCTAAATC 52115939
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||||| ||| ||| ||| ||||||| | ||||| ||| || ||||| ||
Sbjct 52115940 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGACGTCTCGGGACCCATTGGCATC 52115999
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| || || ||||| || || || || | |||||||| ||
Sbjct 52116000 CCAGATTTTCACTCCCTTGGAAGACAGTTCGTTAGCATTTGTGGATCC 52116047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369493298099897
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |