Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 156 6e-33 seq48 136 5e-27 seq60 111 2e-19 seq82 109 8e-19 seq15 98.7 1e-15 seq35 84.2 3e-11 >seq6 Length=61284144 Score = 156 bits (172), Expect = 6e-33 Identities = 524/804 (65%), Gaps = 24/804 (3%) Strand=Plus/Minus Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 47974 ||| ||||||||||| |||| | ||| ||| |||| || | ||||| || | ||| Sbjct 57314863 AAAGTCAAATGGATTTTCTGCTCCAAAAACTTTGCTAAAACCAAGTTCTGGCATAAATCT 57314804 Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCA---CAATTCATTCCTATAAGTTT 48031 ||||| || ||||| || | ||| | ||||| | ||||||||||| |||| Sbjct 57314803 GTCTGCTACAAATTCCATGT---TTTGCCTCATTAAAATGCAATTCATTCCAATAAACCA 57314747 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 | | ||| |||| || || ||||||||||| || | | | || | | ||||| Sbjct 57314746 CAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTATCTTAATAACACCGATAATTATTTC 57314688 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 | |||| ||| ||| ||| ||||| || | |||||| |||| || ||||| || Sbjct 57314687 TTTTACTTTTTACTCTGAAGGTTTGTACAAGAAGTATTTAAATATTAGGCAGGCAAAGTC 57314628 Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211 ||| || | ||| ||| |||| | | |||||| || |||||||||| ||| || Sbjct 57314627 ACAGTGTAAACC-TCA-CTCTGCCTAGTAATTCATTGGAAAATGTGATCGTAGGCCTTGA 57314570 Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 ||| | ||| ||||| | ||| | || |||| |||| | | || | || || Sbjct 57314569 TCCTCATTTCTTGAGGTAGAATGCTAGTGCAAAAGCGCCAG---TGGAGATTTCCTCCAC 57314513 Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGTGC 48331 ||| |||| || | ||||| ||| | ||||| ||| ||| | || Sbjct 57314512 TGCCCCAAAGGCTACCACCTGTTCTCCATAAATAGCTTC---TTGTCCCCAACCAGGT-- 57314458 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 || ||||| |||||||||||| ||||| ||||| |||||| ||||||||| | Sbjct 57314457 CCTGTCAGC---CTTCTTTACACAGGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTC 57314401 Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 || |||| |||||||| | || || || | ||||| || ||||| || || | || Sbjct 57314400 CTCTTTGCCATCTTTAA--TGCGTGTCAATAAGGAGACTCTATATTTCAGAATGCAAGTT 57314343 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 || || || || || || | |||| | | |||||||| |||||||| | | || Sbjct 57314342 GTC-TGTGTCACCTTGAAGCCACAGAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACT 57314284 Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 ||||| | || | |||| | | ||||||||| | |||| || || | Sbjct 57314283 AAATCACTGCACCGGGGTTTCATATCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGC 57314224 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 48631 ||| ||||||| | | || | |||| ||||||| | | || || || Sbjct 57314223 CTGTGATATAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGA 57314165 Query 48632 TATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | |||||| || || ||||| ||| || ||||| ||||| | ||||| | ||| || Sbjct 57314164 GAGATCTACCTCCTCCACTGTCTCAAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAAT 57314105 Query 48692 ATCACTGTATTGGATTGGGAAAAT 48715 || ||||| || || ||||| Sbjct 57314104 GCCATGGTATTTGACAGGAAAAAT 57314081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 177/259 (68%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | ||||||| |||| | | ||| |||||| Sbjct 35269154 TCCAGTGGAACCAAAACCTCTTGAAC--CCGTTTCAGTGTCATCCAAAACTTGAACTTCC 35269097 Query 45934 T-TC-AGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTAT 45991 | || | || |||||| | || | || | | | || || || |||| |||||| | | Sbjct 35269096 TCTCTATTTCTGGATAAAAAATCCATTCACAAACGAGCTGTGCAATTCAATCACCTTTTT 35269037 Query 45992 TTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051 | |||||||| | ||||| ||| ||| | ||| | | |||| | |||||||||| Sbjct 35269036 TGATTTCAAACTTTTCTTTGCCAAAATTAAACAGTACACCACCAACATTTCCTCTATAAT 35268977 Query 46052 CTTCATCTATTACTCCCCCTCCCACAT---CGATACCTTTTAGAGACAGTCCAGATCTAG 46108 |||| | || || || |||| |||| || ||| | || || ||||| | Sbjct 35268976 CTTCCTTCATGACACCAGCTCCTACATTTATGAAGTGTTTGACAGCCAAGCCAGAATGTG 35268917 Query 46109 GAGCTATTCTTCCATAACA 46127 |||||| | |||||||||| Sbjct 35268916 GAGCTACTTTTCCATAACA 35268898 >seq48 Length=18573065 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | || Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2886354 TTTCTTACACCAT 2886366 Score = 127 bits (140), Expect = 3e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| |||||||| ||||| | |||||| ||||| || ||||| || | Sbjct 2907859 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCA 2907918 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| |||| || || ||| ||| Sbjct 2907919 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 2907978 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 ||| || | || ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 2907979 CTAGTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2908033 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||||||||| | || || || || || ||||| || || | ||| | |||||| Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432 Query 78518 CATATGCTGAGGTCTTTC 78535 ||||||||| |||||||| Sbjct 2903433 CATATGCTGTGGTCTTTC 2903450 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 2895436 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 2895495 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || ||||||| || Sbjct 2895496 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCAAGGC 2895555 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 2895556 TCCAGGTAAATAGCAAATGCCCCAGGTCG 2895584 >seq60 Length=14545593 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | || || ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973 Query 48285 GTAAGTCTCTCTCC 48298 || || |||||| Sbjct 8428972 ACAACTCGCTCTCC 8428959 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGA--GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| || | ||||| ||||| Sbjct 8430743 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGACATCACTCC 8430684 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 8430683 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 8430624 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 8430623 ATTCTCCATAAAGTCAAATGGATT 8430600 >seq82 Length=9772303 Score = 109 bits (120), Expect = 8e-19 Identities = 244/362 (67%), Gaps = 21/362 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | | ||||||||| |||||| | || ||||| | Sbjct 7100436 TCCAGTGGAACCAAAACCTCCTGAATATCTTTCAGTGTCATCTAAAACTTTAACTTCGTC 7100377 Query 45936 CAGATCAGGAT------AATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGT 45989 | || ||| || | || ||| | | || || | || |||| | ||| | Sbjct 7100376 TATTTCTGGAATAAAAAAAAAAATCAGTTCACAAATGAGCCGTGCAATTCGACTGCCCTT 7100317 Query 45990 ATTTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATA 46049 || | || |||| | ||||| | | ||| | ||| || || |||| | |||||||| Sbjct 7100316 TTTGACTTTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATA 7100257 Query 46050 ATCTTCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCT 46106 |||||||||||| || || |||| ||||| || |||| || || ||||| Sbjct 7100256 ATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATG 7100197 Query 46107 AGGAGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAA 46162 |||||||||||||||||| ||||| || |||| ||| |||| || ||||| | Sbjct 7100196 TGGAGCTATTCTTCCATAAAACTCAGAA----GGAATAGCTATCTGAATGTCGGTTTTCA 7100141 Query 46163 TCAATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220 ||| || ||||| ||| || | ||||| || ||||||||||| | ||||| || Sbjct 7100140 -CAA-GGGCTGTCTCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCC 7100083 Query 46221 TG 46222 || Sbjct 7100082 TG 7100081 >seq15 Length=34426505 Score = 98.7 bits (108), Expect = 1e-15 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || ||||||||| ||| | | |||||||| ||| | | ||| ||||| Sbjct 33280753 TCCAGTAGAACCAAATCCTCCTGAAC--CCCTTTCAGTGATATCCAAAACTTGATCTTCC 33280696 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || | || | | || || || || |||| ||||||| | || Sbjct 33280695 TCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 33280636 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| || ||| | ||| | || |||| | ||||| |||||| Sbjct 33280635 ACTTCAAACTTTTCTTTGCCGAAATTAAACAGTACAACACCAACATTTCCTCTGTAATCT 33280576 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| || || ||||| | || Sbjct 33280575 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGG 33280516 Query 46111 GCTATTCTTCCATAAC 46126 |||| ||||||||||| Sbjct 33280515 GCTACTCTTCCATAAC 33280500 >seq35 Length=24201928 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||| || ||||||||||| || |||||||| ||||| || || |||| Sbjct 13547394 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAA 13547453 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 |||| || || | || || || || ||||||| | || ||| ||||||| Sbjct 13547454 AATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641994467680