Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 6e-33
seq48 136 5e-27
seq60 111 2e-19
seq82 109 8e-19
seq15 98.7 1e-15
seq35 84.2 3e-11
>seq6
Length=61284144
Score = 156 bits (172), Expect = 6e-33
Identities = 524/804 (65%), Gaps = 24/804 (3%)
Strand=Plus/Minus
Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 47974
||| ||||||||||| |||| | ||| ||| |||| || | ||||| || | |||
Sbjct 57314863 AAAGTCAAATGGATTTTCTGCTCCAAAAACTTTGCTAAAACCAAGTTCTGGCATAAATCT 57314804
Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCA---CAATTCATTCCTATAAGTTT 48031
||||| || ||||| || | ||| | ||||| | ||||||||||| ||||
Sbjct 57314803 GTCTGCTACAAATTCCATGT---TTTGCCTCATTAAAATGCAATTCATTCCAATAAACCA 57314747
Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091
| | ||| |||| || || ||||||||||| || | | | || | | |||||
Sbjct 57314746 CAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTATCTTAATAACACCGATAATTATTTC 57314688
Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151
| |||| ||| ||| ||| ||||| || | |||||| |||| || ||||| ||
Sbjct 57314687 TTTTACTTTTTACTCTGAAGGTTTGTACAAGAAGTATTTAAATATTAGGCAGGCAAAGTC 57314628
Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211
||| || | ||| ||| |||| | | |||||| || |||||||||| ||| ||
Sbjct 57314627 ACAGTGTAAACC-TCA-CTCTGCCTAGTAATTCATTGGAAAATGTGATCGTAGGCCTTGA 57314570
Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271
||| | ||| ||||| | ||| | || |||| |||| | | || | || ||
Sbjct 57314569 TCCTCATTTCTTGAGGTAGAATGCTAGTGCAAAAGCGCCAG---TGGAGATTTCCTCCAC 57314513
Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTTGTGC 48331
||| |||| || | ||||| ||| | ||||| ||| ||| | ||
Sbjct 57314512 TGCCCCAAAGGCTACCACCTGTTCTCCATAAATAGCTTC---TTGTCCCCAACCAGGT-- 57314458
Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391
|| ||||| |||||||||||| ||||| ||||| |||||| ||||||||| |
Sbjct 57314457 CCTGTCAGC---CTTCTTTACACAGGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTC 57314401
Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451
|| |||| |||||||| | || || || | ||||| || ||||| || || | ||
Sbjct 57314400 CTCTTTGCCATCTTTAA--TGCGTGTCAATAAGGAGACTCTATATTTCAGAATGCAAGTT 57314343
Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511
|| || || || || || | |||| | | |||||||| |||||||| | | ||
Sbjct 57314342 GTC-TGTGTCACCTTGAAGCCACAGAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACT 57314284
Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571
||||| | || | |||| | | ||||||||| | |||| || || |
Sbjct 57314283 AAATCACTGCACCGGGGTTTCATATCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGC 57314224
Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 48631
||| ||||||| | | || | |||| ||||||| | | || || ||
Sbjct 57314223 CTGTGATATAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGA 57314165
Query 48632 TATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
| |||||| || || ||||| ||| || ||||| ||||| | ||||| | ||| ||
Sbjct 57314164 GAGATCTACCTCCTCCACTGTCTCAAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAAT 57314105
Query 48692 ATCACTGTATTGGATTGGGAAAAT 48715
|| ||||| || || |||||
Sbjct 57314104 GCCATGGTATTTGACAGGAAAAAT 57314081
Score = 84.2 bits (92), Expect = 3e-11
Identities = 177/259 (68%), Gaps = 9/259 (3%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | ||||||| |||| | | ||| ||||||
Sbjct 35269154 TCCAGTGGAACCAAAACCTCTTGAAC--CCGTTTCAGTGTCATCCAAAACTTGAACTTCC 35269097
Query 45934 T-TC-AGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTAT 45991
| || | || |||||| | || | || | | | || || || |||| |||||| | |
Sbjct 35269096 TCTCTATTTCTGGATAAAAAATCCATTCACAAACGAGCTGTGCAATTCAATCACCTTTTT 35269037
Query 45992 TTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051
| |||||||| | ||||| ||| ||| | ||| | | |||| | ||||||||||
Sbjct 35269036 TGATTTCAAACTTTTCTTTGCCAAAATTAAACAGTACACCACCAACATTTCCTCTATAAT 35268977
Query 46052 CTTCATCTATTACTCCCCCTCCCACAT---CGATACCTTTTAGAGACAGTCCAGATCTAG 46108
|||| | || || || |||| |||| || ||| | || || ||||| |
Sbjct 35268976 CTTCCTTCATGACACCAGCTCCTACATTTATGAAGTGTTTGACAGCCAAGCCAGAATGTG 35268917
Query 46109 GAGCTATTCTTCCATAACA 46127
|||||| | ||||||||||
Sbjct 35268916 GAGCTACTTTTCCATAACA 35268898
>seq48
Length=18573065
Score = 136 bits (150), Expect = 5e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | ||
Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||||||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 2886354 TTTCTTACACCAT 2886366
Score = 127 bits (140), Expect = 3e-24
Identities = 133/175 (76%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798
|| |||| || | ||| |||||||| ||||| | |||||| ||||| || ||||| || |
Sbjct 2907859 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCA 2907918
Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858
| || ||||||||||| || | ||||| | || || ||| |||| || || ||| |||
Sbjct 2907919 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 2907978
Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913
||| || | || ||||||||| | |||| ||||| || |||||||||| |||
Sbjct 2907979 CTAGTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 2908033
Score = 111 bits (122), Expect = 2e-19
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373
Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517
|||||||||||||| | || || || || || ||||| || || | ||| | ||||||
Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432
Query 78518 CATATGCTGAGGTCTTTC 78535
||||||||| ||||||||
Sbjct 2903433 CATATGCTGTGGTCTTTC 2903450
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 2895436 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 2895495
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || ||||| | || || ||||||| ||
Sbjct 2895496 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCAAGGC 2895555
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 2895556 TCCAGGTAAATAGCAAATGCCCCAGGTCG 2895584
>seq60
Length=14545593
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | || || ||||| ||||| |||||||| ||||| ||||| |||
Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973
Query 48285 GTAAGTCTCTCTCC 48298
|| || ||||||
Sbjct 8428972 ACAACTCGCTCTCC 8428959
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/144 (76%), Gaps = 4/144 (3%)
Strand=Plus/Minus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGA--GACATAACTCC 47845
|||| |||| |||||| |||| || | |||| ||| ||| || | ||||| |||||
Sbjct 8430743 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGACATCACTCC 8430684
Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905
||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| ||
Sbjct 8430683 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 8430624
Query 47906 ATTTTCCATAAAATCAAATGGATT 47929
||| |||||||| |||||||||||
Sbjct 8430623 ATTCTCCATAAAGTCAAATGGATT 8430600
>seq82
Length=9772303
Score = 109 bits (120), Expect = 8e-19
Identities = 244/362 (67%), Gaps = 21/362 (6%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
||||||||| ||||| ||| | | ||||||||| |||||| | || ||||| |
Sbjct 7100436 TCCAGTGGAACCAAAACCTCCTGAATATCTTTCAGTGTCATCTAAAACTTTAACTTCGTC 7100377
Query 45936 CAGATCAGGAT------AATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGT 45989
| || ||| || | || ||| | | || || | || |||| | ||| |
Sbjct 7100376 TATTTCTGGAATAAAAAAAAAAATCAGTTCACAAATGAGCCGTGCAATTCGACTGCCCTT 7100317
Query 45990 ATTTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATA 46049
|| | || |||| | ||||| | | ||| | ||| || || |||| | ||||||||
Sbjct 7100316 TTTGACTTTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATA 7100257
Query 46050 ATCTTCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCT 46106
|||||||||||| || || |||| ||||| || |||| || || |||||
Sbjct 7100256 ATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATG 7100197
Query 46107 AGGAGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAA 46162
|||||||||||||||||| ||||| || |||| ||| |||| || ||||| |
Sbjct 7100196 TGGAGCTATTCTTCCATAAAACTCAGAA----GGAATAGCTATCTGAATGTCGGTTTTCA 7100141
Query 46163 TCAATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220
||| || ||||| ||| || | ||||| || ||||||||||| | ||||| ||
Sbjct 7100140 -CAA-GGGCTGTCTCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCC 7100083
Query 46221 TG 46222
||
Sbjct 7100082 TG 7100081
>seq15
Length=34426505
Score = 98.7 bits (108), Expect = 1e-15
Identities = 177/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
|||||| || ||||||||| ||| | | |||||||| ||| | | ||| |||||
Sbjct 33280753 TCCAGTAGAACCAAATCCTCCTGAAC--CCCTTTCAGTGATATCCAAAACTTGATCTTCC 33280696
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || |||||| | || | || | | || || || || |||| ||||||| | ||
Sbjct 33280695 TCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 33280636
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| || ||| | ||| | || |||| | ||||| ||||||
Sbjct 33280635 ACTTCAAACTTTTCTTTGCCGAAATTAAACAGTACAACACCAACATTTCCTCTGTAATCT 33280576
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||| | || || |||| ||||| || |||| || || ||||| | ||
Sbjct 33280575 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGG 33280516
Query 46111 GCTATTCTTCCATAAC 46126
|||| |||||||||||
Sbjct 33280515 GCTACTCTTCCATAAC 33280500
>seq35
Length=24201928
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
||||||| ||||| || ||||||||||| || |||||||| ||||| || || ||||
Sbjct 13547394 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAA 13547453
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633
|||| || || | || || || || ||||||| | || ||| |||||||
Sbjct 13547454 AATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694641994467680
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