Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq48 141 1e-28 seq6 134 2e-26 seq60 107 3e-18 seq35 107 3e-18 seq82 84.2 3e-11 >seq48 Length=18573065 Score = 141 bits (156), Expect = 1e-28 Identities = 111/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | || Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||||||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 2886354 TTTCTTACACCAT 2886366 Score = 109 bits (120), Expect = 8e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||||||| | || || ||||| || || ||||| || |||| || | |||||| Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432 Query 77113 CATATGCTGAGGTCGTTCT 77131 ||||||||| |||| |||| Sbjct 2903433 CATATGCTGTGGTCTTTCT 2903451 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051 || || || || || || || || |||||||| ||||| || || | |||||| || Sbjct 2890593 TCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGCAAC 2890652 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 || || || |||| ||||||||||| | |||||||| |||||||| || || || Sbjct 2890653 TGGGCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGT 2890712 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||||| ||||| || | ||| | ||||| || Sbjct 2890713 ACCCCAATTCCAATGGGGCGATGGCGTTTATTTGA 2890747 >seq6 Length=61284144 Score = 134 bits (148), Expect = 2e-26 Identities = 507/780 (65%), Gaps = 28/780 (4%) Strand=Plus/Minus Query 46430 AAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTT 46489 ||| ||| |||| || | ||||| || | ||| ||||| || ||||| || | ||| Sbjct 57314837 AAACTTTGCTAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTT 57314781 Query 46490 TCATCATTTCA---CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 | ||||| | ||||||||||| || | | | ||| |||| || || |||| Sbjct 57314780 GCCTCATTAAAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACT 57314722 Query 46547 CTTGTTCAATAGTGACAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||| || | | | || |||||| |||| | ||||| ||| ||| ||| Sbjct 57314721 CTTGTTCTATCTTAATAACA-CCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTG 57314663 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTA 46665 | || || | |||||| |||| || ||||| ||||| || | ||| || |||| | Sbjct 57314662 TACAAGAAGTATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACCT-CA-CTCTGCCT 57314605 Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA-T 46724 | |||||| || |||||||||| | |||| || ||| | || ||||| | ||| | Sbjct 57314604 AGTAATTCATTGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCT 57314545 Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 || || |||| |||| ||| | | || || ||| | || || || | || Sbjct 57314544 AGT-GCAAAAGCGCCAGTGGAGATTT---CCTCCACTGCCCCAAAGGCTACCACCTGTTC 57314489 Query 46785 TCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 ||| ||| | || || | ||| | | || |||||||| ||||||||| Sbjct 57314488 TCCATAAATAGCTTCTTG-----TCCCCAACCAGGTCCTGTCAGCCTT---CTTTACACA 57314437 Query 46845 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGT 46904 ||||| ||||| |||||| ||||||||| | || | | ||||||| || || Sbjct 57314436 GGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTA--ATGCGT 57314379 Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964 || || | ||||| || ||||| ||||| | ||| || | | || || || || | Sbjct 57314378 GTCAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGT-GTCACCTTGAAGCCACA 57314320 Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATT 47024 |||| | ||||||| ||||||||||| | || || ||||| | | | |||| Sbjct 57314319 GAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATA 57314260 Query 47025 CACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084 | ||||||||| | |||| || ||| | ||| ||||||| | | || | Sbjct 57314259 TCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCAC 57314200 Query 47085 GGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 | |||| ||||||| | | || || || | |||||| || || ||||| Sbjct 57314199 AGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTC 57314141 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || || ||||| ||||| | ||||| | ||| || || | |||| || |||||||| Sbjct 57314140 AAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081 >seq60 Length=14545593 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || || ||||| ||||| || ||||| ||||| || || ||| Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973 Query 46774 ACAAGTCTCTCTCC 46787 |||| || |||||| Sbjct 8428972 ACAACTCGCTCTCC 8428959 >seq35 Length=24201928 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| |||||||| ||||| |||||||| || || | || | Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || || ||||| || ||||| || ||||||||||| || || | Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860 Query 46772 CGAC 46775 | || Sbjct 13540861 CCAC 13540864 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| |||||||| ||||||||||| || |||||||| || || || || ||||| Sbjct 13547395 CAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAA 13547454 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 ||| || ||||| | || || || ||||||| | || ||| ||||||| Sbjct 13547455 ATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| | Sbjct 13551310 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 13551369 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 13551370 GTACTGGATGGGAAAGATGACAAATC 13551395 >seq82 Length=9772303 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/236 (69%), Gaps = 15/236 (6%) Strand=Plus/Minus Query 44483 TTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCTTC 44542 |||||| | ||||| | | ||| | || || || |||| || || ||||||||||| Sbjct 7100310 TTTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTC 7100251 Query 44543 ATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACCCGATCTAGGCGC 44599 |||||| || ||| |||| ||||| || |||| || | || || || || Sbjct 7100250 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGC 7100191 Query 44600 TATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAACC 44655 ||||||||||||| ||||| || |||| || |||| || ||||| | ||| Sbjct 7100190 TATTCTTCCATAAAACTCAGAA----GGAATAGCTATCTGAATGTCGGTTTTCA-CAA-G 7100137 Query 44656 GTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTG 44709 | || ||||| ||| || | |||||||| || |||||||| | ||||| |||| Sbjct 7100136 GGCTGTCTCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCCTG 7100081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906889643840