Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq48 141 1e-28
seq6 134 2e-26
seq60 107 3e-18
seq35 107 3e-18
seq82 84.2 3e-11
>seq48
Length=18573065
Score = 141 bits (156), Expect = 1e-28
Identities = 111/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | ||
Sbjct 2886234 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATGGAC 2886293
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||||||| ||||||||||||||||| ||||| || || | | ||||||
Sbjct 2886294 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2886353
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 2886354 TTTCTTACACCAT 2886366
Score = 109 bits (120), Expect = 8e-19
Identities = 109/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| ||||| || ||||| || |||||||| || |||
Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373
Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|||||||||||| | || || ||||| || || ||||| || |||| || | ||||||
Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 2903432
Query 77113 CATATGCTGAGGTCGTTCT 77131
||||||||| |||| ||||
Sbjct 2903433 CATATGCTGTGGTCTTTCT 2903451
Score = 86.0 bits (94), Expect = 9e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051
|| || || || || || || || |||||||| ||||| || || | |||||| ||
Sbjct 2890593 TCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGCAAC 2890652
Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111
|| || || |||| ||||||||||| | |||||||| |||||||| || || ||
Sbjct 2890653 TGGGCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGT 2890712
Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
|| ||||| ||||| || | ||| | ||||| ||
Sbjct 2890713 ACCCCAATTCCAATGGGGCGATGGCGTTTATTTGA 2890747
>seq6
Length=61284144
Score = 134 bits (148), Expect = 2e-26
Identities = 507/780 (65%), Gaps = 28/780 (4%)
Strand=Plus/Minus
Query 46430 AAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTT 46489
||| ||| |||| || | ||||| || | ||| ||||| || ||||| || | |||
Sbjct 57314837 AAACTTTGCTAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTT 57314781
Query 46490 TCATCATTTCA---CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546
| ||||| | ||||||||||| || | | | ||| |||| || || ||||
Sbjct 57314780 GCCTCATTAAAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACT 57314722
Query 46547 CTTGTTCAATAGTGACAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605
||||||| || | | | || |||||| |||| | ||||| ||| ||| |||
Sbjct 57314721 CTTGTTCTATCTTAATAACA-CCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTG 57314663
Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTA 46665
| || || | |||||| |||| || ||||| ||||| || | ||| || |||| |
Sbjct 57314662 TACAAGAAGTATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACCT-CA-CTCTGCCT 57314605
Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA-T 46724
| |||||| || |||||||||| | |||| || ||| | || ||||| | ||| |
Sbjct 57314604 AGTAATTCATTGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCT 57314545
Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784
|| || |||| |||| ||| | | || || ||| | || || || | ||
Sbjct 57314544 AGT-GCAAAAGCGCCAGTGGAGATTT---CCTCCACTGCCCCAAAGGCTACCACCTGTTC 57314489
Query 46785 TCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844
||| ||| | || || | ||| | | || |||||||| |||||||||
Sbjct 57314488 TCCATAAATAGCTTCTTG-----TCCCCAACCAGGTCCTGTCAGCCTT---CTTTACACA 57314437
Query 46845 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGT 46904
||||| ||||| |||||| ||||||||| | || | | ||||||| || ||
Sbjct 57314436 GGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTA--ATGCGT 57314379
Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964
|| || | ||||| || ||||| ||||| | ||| || | | || || || || |
Sbjct 57314378 GTCAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGT-GTCACCTTGAAGCCACA 57314320
Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATT 47024
|||| | ||||||| ||||||||||| | || || ||||| | | | ||||
Sbjct 57314319 GAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATA 57314260
Query 47025 CACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084
| ||||||||| | |||| || ||| | ||| ||||||| | | || |
Sbjct 57314259 TCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCAC 57314200
Query 47085 GGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144
| |||| ||||||| | | || || || | |||||| || || |||||
Sbjct 57314199 AGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTC 57314141
Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204
|| || ||||| ||||| | ||||| | ||| || || | |||| || ||||||||
Sbjct 57314140 AAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081
>seq60
Length=14545593
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | || || ||||| ||||| || ||||| ||||| || || |||
Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || ||||| || || || || ||
Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973
Query 46774 ACAAGTCTCTCTCC 46787
|||| || ||||||
Sbjct 8428972 ACAACTCGCTCTCC 8428959
>seq35
Length=24201928
Score = 107 bits (118), Expect = 3e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| |||||||| ||||| |||||||| || || | || |
Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || || ||||| || ||||| || ||||||||||| || || |
Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860
Query 46772 CGAC 46775
| ||
Sbjct 13540861 CCAC 13540864
Score = 86.0 bits (94), Expect = 9e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072
|||||| |||||||| ||||||||||| || |||||||| || || || || |||||
Sbjct 13547395 CAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAA 13547454
Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122
||| || ||||| | || || || ||||||| | || ||| |||||||
Sbjct 13547455 ATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| |
Sbjct 13551310 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 13551369
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 13551370 GTACTGGATGGGAAAGATGACAAATC 13551395
>seq82
Length=9772303
Score = 84.2 bits (92), Expect = 3e-11
Identities = 163/236 (69%), Gaps = 15/236 (6%)
Strand=Plus/Minus
Query 44483 TTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCTTC 44542
|||||| | ||||| | | ||| | || || || |||| || || |||||||||||
Sbjct 7100310 TTTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTC 7100251
Query 44543 ATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACCCGATCTAGGCGC 44599
|||||| || ||| |||| ||||| || |||| || | || || || ||
Sbjct 7100250 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGC 7100191
Query 44600 TATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAACC 44655
||||||||||||| ||||| || |||| || |||| || ||||| | |||
Sbjct 7100190 TATTCTTCCATAAAACTCAGAA----GGAATAGCTATCTGAATGTCGGTTTTCA-CAA-G 7100137
Query 44656 GTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTG 44709
| || ||||| ||| || | |||||||| || |||||||| | ||||| ||||
Sbjct 7100136 GGCTGTCTCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCCTG 7100081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712906889643840
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