Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 8e-15 seq30 91.5 3e-13 seq25 87.8 4e-12 >seq14 Length=35217250 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 7097611 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7097670 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || ||||| || | ||||||||| Sbjct 7097671 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCC 7097730 Query 152007 TT-TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || |||| || || |||| || | |||| | || || || || || |||| Sbjct 7097731 TTATTCTGGATCTTGGCCTTTG-CACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGC 7097789 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || | |||||||| | |||||| || Sbjct 7097790 GATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831 >seq30 Length=26277727 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || |||||||| ||||| |||||||||||||| | | || | |||||| Sbjct 20335817 AGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCT 20335876 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| |||||||| | |||||||||||| | | ||| || ||||| || Sbjct 20335877 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 20335936 Query 152013 TGAATTTT 152020 || || || Sbjct 20335937 TGGATCTT 20335944 >seq25 Length=29395486 Score = 87.8 bits (96), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||||| || || || || |||||| ||| |||||| || | | ||| Sbjct 9574054 CCTCAGACAGAGGATCAGGTGCAGGGTTGACTCT----GGAGGTTGTAGTCAGAAAGAGT 9574109 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||||||||||| || || || ||||| |||||||||||||| | | ||| || Sbjct 9574110 GAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 9574169 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || | ||| |||| | | | || ||| || || || Sbjct 9574170 TTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATGGTATC---ACTGGGTTCCACCTC 9574226 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || ||||||||||||| |||||||| Sbjct 9574227 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 9574274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153775163863377