Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq44 125 1e-23 seq14 123 5e-23 seq25 109 1e-18 seq30 104 5e-17 seq1 98.7 2e-15 seq162 91.5 3e-13 seq111 89.7 1e-12 seq15 89.7 1e-12 seq4 87.8 4e-12 >seq44 Length=19882732 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||| ||||||||||| ||| || | ||| ||||| ||||| ||| |||| | Sbjct 2427252 CCACTCCGCAGGCGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAG 2427311 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| ||| ||||| || ||||| || ||||| ||| || || |||||| || Sbjct 2427312 AGAGTGCCGCCGTCCTCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGG 2427371 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||| ||||||||| || ||||| || | || ||| |||| | ||||| Sbjct 2427372 ATGCCCTCCTCGTCTTGGATTTTAGCTTTGACATTCTCAATAATGTCACCGGGCTCGACC 2427431 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||| ||||| ||||| ||| ||| ||||| || || ||||| || Sbjct 2427432 TTGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 10264311 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 10264369 >seq14 Length=35217250 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||| || | | || ||||| | ||| || ||||| ||||||||||||| Sbjct 7097601 ACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 7097660 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || ||||| || || |||||||||| | ||| || ||| || Sbjct 7097661 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGG 7097720 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| | |||||||| || ||| | | || || | ||||| | ||| || Sbjct 7097721 AATTCCTTCCTTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAAC 7097780 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||| ||| ||||| ||||| | | || ||||| |||||||| || Sbjct 7097781 CTCGAGAGCGATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831 >seq25 Length=29395486 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||| ||||||||||| ||| ||| ||||||| ||||| || || || |||||||| | Sbjct 9574087 TGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGC 9574146 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 | || |||||| || || || || || || |||||||| || | || | || || Sbjct 9574147 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATG 9574206 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 || || | ||| || || || ||||| ||||| || |||| ||||| ||||| || Sbjct 9574207 GTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATT 9574266 Query 283095 TGCATTTT 283102 |||||||| Sbjct 9574267 TGCATTTT 9574274 >seq30 Length=26277727 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | || ||| || |||| || | || |||||| ||||||||||| |||| Sbjct 20335801 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGATTCTTTCTGGATGTTGTAATCAGA 20335860 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || |||||||| || |||||||| | || |||||| || Sbjct 20335861 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 20335920 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||||||| |||||||| || || Sbjct 20335921 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 20335950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 20352814 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGAT 20352755 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 20346687 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 20346629 >seq1 Length=79733107 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 23541285 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 23541343 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 21446091 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 21446149 >seq162 Length=873626 Score = 91.5 bits (100), Expect = 3e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 46059 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGAT 46118 >seq111 Length=4240621 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3786520 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3786578 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3917650 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3917592 >seq15 Length=34426505 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 116712 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 116770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||| ||||| || || ||||| | | || |||| | |||||| || ||||| || Sbjct 5796466 GTGCACTCTTTCTGAATATTGTACCCTGTGAGAGTGCAACTATCCTCCAGCTGTTTGCCT 5796525 Query 282963 GCAAAGATCAAAC---GTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||| || |||||||| | |||| |||| ||||||||||| || | | Sbjct 5796526 GCAAAAATCAGACACTGTTGTTGGGTA---GGAAG-CCCTTATTGTCTTGGATTTTGGTT 5796581 Query 283020 TTTACGGTATCGATAGTGT--CCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077 || || | || |||||| | | || ||||| || |||| ||| ||||| ||| ||| Sbjct 5796582 TTGACATTCTCAGTAGTGTAACTGGAG--TCGACCTCAAGAGAGATGGTCTTGCCCATCA 5796639 Query 283078 AAGTCTTAACGAATATCTGCAT 283099 ||||| | || |||||||| Sbjct 5796640 GGGTCTTCATAAAGATCTGCAT 5796661 >seq4 Length=66015319 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||| ||| | || || ||| ||||| ||||| || |||| Sbjct 20407308 TCTTTCTGGATGTTGTTGTCTGAGAGAGTTTGGCTATCCTTCCTCTGTTTGCCTACAAAA 20407367 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | | || || || || ||||||||||||||||||| || ||||| || | Sbjct 20407368 ATCAGATGCTGCAGGGCAGGCGAGGTACCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 20407427 Query 283029 TCGATAGTGTC-CGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 | | | ||||| | |||| ||| | ||| || || ||||| || |||| ||||| || Sbjct 20407428 TTGGTGGTGTCACTGGGCTT-GACCTTGAGGGTAATGGTCTTGCCTGTCAGGGTCTTCAC 20407486 Query 283088 GAATATCTGCAT 283099 || ||||||| Sbjct 20407487 AAAGTTCTGCAT 20407498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046697799174898