Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14 105 5e-18 seq25 98.7 7e-16 >seq14 Length=35217250 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 7097611 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7097670 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | |||||||| ||| | |||||| Sbjct 7097671 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCC 7097730 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || | | ||||| ||| || |||| | || | || ||| ||||| | | Sbjct 7097731 TTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCG 7097790 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| ||| | |||||||| || ||||| Sbjct 7097791 ATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828 >seq25 Length=29395486 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || |||||||| | | |||||| || | ||| | ||||| || Sbjct 9574117 TCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 9574176 Query 44243 TCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| || || || ||| ||||| || || ||||||||||| || || Sbjct 9574177 TCCTGGATCTTGGCCTCCACATTCTCC-ATGGTATCACTGGGTTCCACCTCCAGGGTGAT 9574235 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||||||||||||||||||||| Sbjct 9574236 GGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 9574271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359976856148679