Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq14 105 5e-18
seq25 98.7 7e-16
>seq14
Length=35217250
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 7097611 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7097670
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | |||||||| ||| | ||||||
Sbjct 7097671 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCC 7097730
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| | | ||||| ||| || |||| | || | || ||| ||||| | |
Sbjct 7097731 TTATTCTGGATCTTGGCCTTTGCACTTTCTATTATATCCGAGGGTTCAACCTCGAGAGCG 7097790
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||| | |||||||| || |||||
Sbjct 7097791 ATGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCAT 7097828
>seq25
Length=29395486
Score = 98.7 bits (108), Expect = 7e-16
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || |||||||| || |||||||| | | |||||| || | ||| | ||||| ||
Sbjct 9574117 TCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 9574176
Query 44243 TCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301
||| ||||| || || || ||| ||||| || || ||||||||||| || ||
Sbjct 9574177 TCCTGGATCTTGGCCTCCACATTCTCC-ATGGTATCACTGGGTTCCACCTCCAGGGTGAT 9574235
Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || |||||||||||||||||||||||
Sbjct 9574236 GGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 9574271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359976856148679
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |