Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq15 152 7e-32
seq11 132 7e-26
>seq15
Length=34426505
Score = 152 bits (168), Expect = 7e-32
Identities = 228/324 (70%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 8263 CTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCT 8322
|||| ||||| | ||| |||| | |||||| | || ||||| || || ||||| |
Sbjct 13022009 CTTGGTGAGCTGCGGATCTTGAACACTGAACGCAGTGAAAGGACAGCCTTTCACGTTATT 13021950
Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382
|||| ||||||||||| | || | |||| |||| || || || || || || ||
Sbjct 13021949 GCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAA 13021890
Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442
||||| ||||||||||| | ||||| || || || ||||||| ||||| | |||
Sbjct 13021889 AGTGCTAGGCTTCCAGTAGTCAGGGGAACATATAGGATTACCCATGAGTCCTTTCAAGGA 13021830
Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8502
|| || || |||| || | ||| |||| || |||||||| | ||||| ||||||||
Sbjct 13021829 AAATGGTGCTCCCAGTTCTACCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTC 13021770
Query 8503 CACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTC 8562
|||| | | | |||||||||| || |||| ||| ||||| || || | ||
Sbjct 13021769 TACCAGAAGAGCAGGATACAGCTCCATGGCATCGATGTCACCGTAGAGTGCTTCCAACTC 13021710
Query 8563 GGCAGCGATCTCCTTTTCTCCTGT 8586
||||| || || || ||||||||
Sbjct 13021709 CGCAGCCATTTCTTTCTCTCCTGT 13021686
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| || || ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 13019327 TCTTACCCCATGACCTAGGCCTTTGGTGAAAGCTGGTCCTCGCTTAGGATCTGTCTTGAA 13019268
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||||| || ||||| || ||| |||| || |||||||| | ||| ||||||||||| ||
Sbjct 13019267 GAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGGTC 13019208
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | || ||| ||||||||||| | | || ||| || ||||
Sbjct 13019207 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAGCTC 13019148
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | || |||| || |||||
Sbjct 13019147 TTTGTTCCCTGAAAAATGAGAA 13019126
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | |||||||| || ||| || || ||||| ||| || | |
Sbjct 13018733 TCACCTTTCACACCCATGGGAGTTGGGCAGCCGTCAGCCACAGGAGGAAGAGCTCTGGTG 13018674
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
||||||||||| || || || |||||||||||| || | |||| | |||| || |
Sbjct 13018673 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACGTTATAAGTT 13018614
Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052
|| ||||| ||||||| || ||||
Sbjct 13018613 GGCGGGCTCTCAATCAGATGTGATC 13018589
>seq11
Length=39176111
Score = 132 bits (146), Expect = 7e-26
Identities = 171/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| || ||| |||| || || || || ||||| |||||||||||| |||| |
Sbjct 24311670 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTACTCCGGAG 24311611
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||||||||||||||| || |||||||| | || | || |
Sbjct 24311610 AACAGATGGGATTCCCTAGGAGGCCTTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 24311551
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||||| ||| ||| || ||| || | | | || | ||| | |||||
Sbjct 24311550 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCA 24311491
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| |||| |||||| || || || | || ||||| |||||||| ||||||
Sbjct 24311490 AGGCATCGATGTCTCCATATAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 24311435
Score = 87.8 bits (96), Expect = 3e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| || ||||| || | ||| || ||
Sbjct 24303827 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 24303768
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | ||| || || | ||||||| ||||| || | |
Sbjct 24303767 TCAGTCTTCAGCAGGTCACACACACGGTTATGCTCGCGCAGCCAGAGCGTGGCATAGAGC 24303708
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| ||||| || ||||
Sbjct 24303707 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGACCCACGGCCA 24303665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716849137516480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |