Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq15 152 7e-32 seq11 132 7e-26 >seq15 Length=34426505 Score = 152 bits (168), Expect = 7e-32 Identities = 228/324 (70%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 8263 CTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCT 8322 |||| ||||| | ||| |||| | |||||| | || ||||| || || ||||| | Sbjct 13022009 CTTGGTGAGCTGCGGATCTTGAACACTGAACGCAGTGAAAGGACAGCCTTTCACGTTATT 13021950 Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382 |||| ||||||||||| | || | |||| |||| || || || || || || || Sbjct 13021949 GCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAA 13021890 Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442 ||||| ||||||||||| | ||||| || || || ||||||| ||||| | ||| Sbjct 13021889 AGTGCTAGGCTTCCAGTAGTCAGGGGAACATATAGGATTACCCATGAGTCCTTTCAAGGA 13021830 Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8502 || || || |||| || | ||| |||| || |||||||| | ||||| |||||||| Sbjct 13021829 AAATGGTGCTCCCAGTTCTACCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTC 13021770 Query 8503 CACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTC 8562 |||| | | | |||||||||| || |||| ||| ||||| || || | || Sbjct 13021769 TACCAGAAGAGCAGGATACAGCTCCATGGCATCGATGTCACCGTAGAGTGCTTCCAACTC 13021710 Query 8563 GGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| || || || |||||||| Sbjct 13021709 CGCAGCCATTTCTTTCTCTCCTGT 13021686 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| || || ||||| ||||| || || |||||| ||| ||| | || Sbjct 13019327 TCTTACCCCATGACCTAGGCCTTTGGTGAAAGCTGGTCCTCGCTTAGGATCTGTCTTGAA 13019268 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||| || ||||| || ||| |||| || |||||||| | ||| ||||||||||| || Sbjct 13019267 GAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGGTC 13019208 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | || ||| ||||||||||| | | || ||| || |||| Sbjct 13019207 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAGCTC 13019148 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 13019147 TTTGTTCCCTGAAAAATGAGAA 13019126 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || ||| || || ||||| ||| || | | Sbjct 13018733 TCACCTTTCACACCCATGGGAGTTGGGCAGCCGTCAGCCACAGGAGGAAGAGCTCTGGTG 13018674 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || || || |||||||||||| || | |||| | |||| || | Sbjct 13018673 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACGTTATAAGTT 13018614 Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052 || ||||| ||||||| || |||| Sbjct 13018613 GGCGGGCTCTCAATCAGATGTGATC 13018589 >seq11 Length=39176111 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || || ||||| |||||||||||| |||| | Sbjct 24311670 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTACTCCGGAG 24311611 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||||||||||||||| || |||||||| | || | || | Sbjct 24311610 AACAGATGGGATTCCCTAGGAGGCCTTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 24311551 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| || | | | || | ||| | ||||| Sbjct 24311550 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCA 24311491 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || || || | || ||||| |||||||| |||||| Sbjct 24311490 AGGCATCGATGTCTCCATATAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 24311435 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || ||||| || | ||| || || Sbjct 24303827 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 24303768 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | ||| || || | ||||||| ||||| || | | Sbjct 24303767 TCAGTCTTCAGCAGGTCACACACACGGTTATGCTCGCGCAGCCAGAGCGTGGCATAGAGC 24303708 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| ||||| || |||| Sbjct 24303707 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGACCCACGGCCA 24303665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716849137516480