Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq3 291 6e-74
seq18 178 9e-40
seq7 159 3e-34
seq9 120 2e-22
seq503 84.2 2e-11
>seq3
Length=88455658
Score = 291 bits (322), Expect = 6e-74
Identities = 332/445 (75%), Gaps = 18/445 (4%)
Strand=Plus/Plus
Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038
|| || |||||||||| |||||||||||| |||||| ||||| ||| ||| |||||
Sbjct 50864791 TTTTCTTATACTTCAAGTTTGTACTTAATGACTTTCTCCTCTTGGACA---GAAGGAACA 50864847
Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098
| ||||||||| | |||||| || || || | |||| |||||||||||| || |||
Sbjct 50864848 CCTGGATATTCCGGGAGAAGTTTATAATTTTCCAAATCATTTTCTGGAAAAAATGTATCA 50864907
Query 4099 CATTCAAAGTCTTGCATGATCCT-AGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157
| |||||| ||||||||||| | || |||||| | | ||| || || ||| | ||||
Sbjct 50864908 CTTTCAAATTCTTGCATGATTTTTAGCCACAAATAATCTAAAATGGCCTGGCTTGTTCAT 50864967
Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217
||||| ||||| | |||||| | ||| | || | |||||||||| |||||||| |||
Sbjct 50864968 GGCTTCCTTATATATAGAACTGCTTCCTGCTTTCAA-ACCATGTCTAGTTTATTTGTTAA 50865026
Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277
| |||| || | | |||||| ||| |||||||| | ||| || || | |||||||||||
Sbjct 50865027 TGCTGGTTGCTTGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCC 50865086
Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC-------------AACATTAATTCTGC 4324
|||||| | ||||| ||||| | ||||||| | ||||||| ||
Sbjct 50865087 TTGTGGAGGTTCCTTGAGTTCTCTATTGAGAACTCAATAATATAATTATATTAATTTTGT 50865146
Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384
|||| |||| | |||||||| ||||| |||||| |||| ||||||||||||| |
Sbjct 50865147 CTTTGAAAGATCAATTCTTCTCTGGAATGATGAACCACATCTTCCTACCCATAATCACCA 50865206
Query 4385 AATTCTGTTTATCTGGTACAGAAGA 4409
|||||||||||||| ||| |||||
Sbjct 50865207 AATTCTGTTTATCTTCTACTGAAGA 50865231
Score = 215 bits (238), Expect = 4e-51
Identities = 194/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||| ||||||||||||| ||| || || || ||||
Sbjct 61966151 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGTCTTTTTCCTCCTGGACAT 61966210
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
||||||||||| ||||||| || | |||||| ||||| || | | ||| ||||||||
Sbjct 61966211 CAGAAAGAACACATGGATATGCTGGGAGAAGTTTATATTTTTCCAAAGCAATTTCTGGAA 61966270
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || |
Sbjct 61966271 AAAATGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCCG 61966330
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | | || | ||| || | |||||||| ||||| | |||||| || ||||||||||
Sbjct 61966331 GCTTGTTTATGGGTTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACTATGTCTACTT 61966390
Query 4208 TATT 4211
||||
Sbjct 61966391 TATT 61966394
>seq18
Length=152661129
Score = 178 bits (196), Expect = 9e-40
Identities = 179/233 (77%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 4288 TCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCA 4347
||||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||
Sbjct 15388717 TCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCT 15388658
Query 4348 GGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAA 4407
||||| |||||||| ||||| ||||||||||||| |||||||||||| || ||| |||
Sbjct 15388657 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAA 15388598
Query 4408 GATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAG 4467
|| ||||||||||||||||||| | || ||||| ||| ||||| |||| |
Sbjct 15388597 GACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCCGAGTGGAGGCCAGGGCAGG 15388538
Query 4468 TTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520
| || ||||| | |||| |||| || | ||||| || ||||||||||
Sbjct 15388537 CTCCCGCTCTTGCCGACGCCCGTGTTCTGGGACACAGCGACGGTGCAGTTTAG 15388485
>seq7
Length=66841537
Score = 159 bits (176), Expect = 3e-34
Identities = 183/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986
||| |||| ||| | || | | | || ||||| || || || |||||||| || | |||
Sbjct 32187154 AGAAAGCTCTTAAGCCACGTGGCGGACGATGGGGGTGACACAGGTGCAGCCCACCGCCAC 32187095
Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046
||||||||||| |||| || || | ||||||| | || || | | || | || ||
Sbjct 32187094 CAGCATCTTCTCCAGCCGGAAGGAGTAAGGGCAGTGCCGAGGCTCCCTCCGTAGGACCAG 32187035
Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106
|||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| |
Sbjct 32187034 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 32186975
Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166
||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || ||
Sbjct 32186974 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 32186915
Query 27167 ATTGCG 27172
||||||
Sbjct 32186914 ATTGCG 32186909
>seq9
Length=141945777
Score = 120 bits (132), Expect = 2e-22
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 104084239 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 104084298
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 104084299 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 104084347
Score = 104 bits (114), Expect = 2e-17
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||
Sbjct 104077919 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 104077978
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256
| ||| |||||| ||| |||||||| | |||
Sbjct 104077979 TCTTCAATAAGTTCTAAGGCATCATCCAGACT 104078010
>seq503
Length=25129
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/159 (73%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 101756 ACATGAGCAATCATGCAAGTTA--AAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTA 101813
|||||||||||||| | || | || ||| || | | ||||| |||||||| |||||||
Sbjct 16477 ACATGAGCAATCATATACGTCAGCAATGAGTAT-GAT-GCAATATTAAATGGTACTCCTA 16534
Query 101814 ACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAA 101873
||||||||| ||||||||| | || ||| || | ||| ||||||| |||||||
Sbjct 16535 GTCCCATATCACATGATCTTTGGTGCATCATACATGACAACTTCCCATCACCAACATAAA 16594
Query 101874 ATTGACTTAATACATGACAAGGCGGCAACACCATTTTAG 101912
| || || | ||| || || || | |||||||||
Sbjct 16595 ACTGGAACAACAAATGGCATGGTGGAAGTGCCATTTTAG 16633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361200660844229
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |