Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 291 6e-74 seq18 178 9e-40 seq7 159 3e-34 seq9 120 2e-22 seq503 84.2 2e-11 >seq3 Length=88455658 Score = 291 bits (322), Expect = 6e-74 Identities = 332/445 (75%), Gaps = 18/445 (4%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||| |||||||||||| |||||| ||||| ||| ||| ||||| Sbjct 50864791 TTTTCTTATACTTCAAGTTTGTACTTAATGACTTTCTCCTCTTGGACA---GAAGGAACA 50864847 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | ||||||||| | |||||| || || || | |||| |||||||||||| || ||| Sbjct 50864848 CCTGGATATTCCGGGAGAAGTTTATAATTTTCCAAATCATTTTCTGGAAAAAATGTATCA 50864907 Query 4099 CATTCAAAGTCTTGCATGATCCT-AGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 | |||||| ||||||||||| | || |||||| | | ||| || || ||| | |||| Sbjct 50864908 CTTTCAAATTCTTGCATGATTTTTAGCCACAAATAATCTAAAATGGCCTGGCTTGTTCAT 50864967 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| | |||||| | ||| | || | |||||||||| |||||||| ||| Sbjct 50864968 GGCTTCCTTATATATAGAACTGCTTCCTGCTTTCAA-ACCATGTCTAGTTTATTTGTTAA 50865026 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 | |||| || | | |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 50865027 TGCTGGTTGCTTGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCC 50865086 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC-------------AACATTAATTCTGC 4324 |||||| | ||||| ||||| | ||||||| | ||||||| || Sbjct 50865087 TTGTGGAGGTTCCTTGAGTTCTCTATTGAGAACTCAATAATATAATTATATTAATTTTGT 50865146 Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 |||| |||| | |||||||| ||||| |||||| |||| ||||||||||||| | Sbjct 50865147 CTTTGAAAGATCAATTCTTCTCTGGAATGATGAACCACATCTTCCTACCCATAATCACCA 50865206 Query 4385 AATTCTGTTTATCTGGTACAGAAGA 4409 |||||||||||||| ||| ||||| Sbjct 50865207 AATTCTGTTTATCTTCTACTGAAGA 50865231 Score = 215 bits (238), Expect = 4e-51 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| ||| || || || |||| Sbjct 61966151 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGTCTTTTTCCTCCTGGACAT 61966210 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||||||| ||||||| || | |||||| ||||| || | | ||| |||||||| Sbjct 61966211 CAGAAAGAACACATGGATATGCTGGGAGAAGTTTATATTTTTCCAAAGCAATTTCTGGAA 61966270 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| |||||| |||||||||||||| |||||||| ||| |||||| || | Sbjct 61966271 AAAATGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCCG 61966330 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| || |||||||||| Sbjct 61966331 GCTTGTTTATGGGTTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACTATGTCTACTT 61966390 Query 4208 TATT 4211 |||| Sbjct 61966391 TATT 61966394 >seq18 Length=152661129 Score = 178 bits (196), Expect = 9e-40 Identities = 179/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 4288 TCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCA 4347 ||||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| Sbjct 15388717 TCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCT 15388658 Query 4348 GGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAA 4407 ||||| |||||||| ||||| ||||||||||||| |||||||||||| || ||| ||| Sbjct 15388657 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAA 15388598 Query 4408 GATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAG 4467 || ||||||||||||||||||| | || ||||| ||| ||||| |||| | Sbjct 15388597 GACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCCGAGTGGAGGCCAGGGCAGG 15388538 Query 4468 TTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 | || ||||| | |||| |||| || | ||||| || |||||||||| Sbjct 15388537 CTCCCGCTCTTGCCGACGCCCGTGTTCTGGGACACAGCGACGGTGCAGTTTAG 15388485 >seq7 Length=66841537 Score = 159 bits (176), Expect = 3e-34 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | || | | | || ||||| || || || |||||||| || | ||| Sbjct 32187154 AGAAAGCTCTTAAGCCACGTGGCGGACGATGGGGGTGACACAGGTGCAGCCCACCGCCAC 32187095 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | || || | | || | || || Sbjct 32187094 CAGCATCTTCTCCAGCCGGAAGGAGTAAGGGCAGTGCCGAGGCTCCCTCCGTAGGACCAG 32187035 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 32187034 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 32186975 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 32186974 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 32186915 Query 27167 ATTGCG 27172 |||||| Sbjct 32186914 ATTGCG 32186909 >seq9 Length=141945777 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 104084239 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 104084298 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 104084299 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 104084347 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 104077919 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 104077978 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256 | ||| |||||| ||| |||||||| | ||| Sbjct 104077979 TCTTCAATAAGTTCTAAGGCATCATCCAGACT 104078010 >seq503 Length=25129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTA--AAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTA 101813 |||||||||||||| | || | || ||| || | | ||||| |||||||| ||||||| Sbjct 16477 ACATGAGCAATCATATACGTCAGCAATGAGTAT-GAT-GCAATATTAAATGGTACTCCTA 16534 Query 101814 ACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAA 101873 ||||||||| ||||||||| | || ||| || | ||| ||||||| ||||||| Sbjct 16535 GTCCCATATCACATGATCTTTGGTGCATCATACATGACAACTTCCCATCACCAACATAAA 16594 Query 101874 ATTGACTTAATACATGACAAGGCGGCAACACCATTTTAG 101912 | || || | ||| || || || | ||||||||| Sbjct 16595 ACTGGAACAACAAATGGCATGGTGGAAGTGCCATTTTAG 16633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361200660844229